Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45830 515 / 4e-180 DTA2 downstream target of AGL15 2 (.1.2) AT3G61270 498 / 1e-173 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT5G23850 491 / 1e-170 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 488 / 2e-169 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 448 / 4e-153 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 428 / 7e-146 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT2G45840 425 / 7e-145 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61290 423 / 7e-145 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 345 / 5e-114 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039228 [exp] 444 / 2e-152 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 428 / 8e-146 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037863 [exp] 406 / 1e-137 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 369 / 5e-124 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 325 / 3e-106 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 322 / 1e-104 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 300 / 6e-97 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 296 / 1e-92 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 263 / 5e-84 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081600 [exp] 575 / 0 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.003G125000 [exp] 516 / 1e-180 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.015G144400 [exp] 500 / 2e-174 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157900 [exp] 473 / 2e-164 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 471 / 1e-163 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 324 / 9e-106 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 94 / 6e-23 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10037864 pacid=23163930 polypeptide=Lus10037864 locus=Lus10037864.g ID=Lus10037864.BGIv1.0 annot-version=v1.0 ATGACGACGACGAGGTACGAAAGGATTTTGAAGCCGTCGGCGGCGTCCAATTCTTCCTCGTCGCCGGTAAAGAGCAGACATCAATCAACCATTGTTTTCC TCCTTTTCTTCTTCTTCGTCTTCCTCTTCGGCATCCTCCATTTTTCTGGTTTCGCCAAAGACTCGTCATCCGTCGGCGGCTTCATCTCCGTCCCGCAAGT AAACTCCGGCGCCCGAGGATGTTGGCAGGATTTCAGTGTCCGATGTCCGACTTCGCCGGCGGGGACCACCAGTACTGATTGGACGTACCCAACAACACAC AACACGACCCGACCATCGAACCTCACCTGCCCGTTCTACTTCCGGTGGATCCACGAGGATCTCCGGCACTGGAAAGTGACCGGGGTCACGATGGAGATGG TGGAACGTGGCCGGAGGAGCGCTCATTTCCGTCTGGTTGTGGTGGAAGGGAGGGCGTACGTGGAGAAGTACCGGCAGGCAATTCAGACCAGAGACGTGTA CACTCTTTGGGGGATTTTGCAGCTGCTCCGAAGGTATCCGGGCAGGGTGCCGGATTTCGAGCTCTTGTTCGACTGCGATGACCTGCCGGTAGTCAGGGCT AAGGACTACCGGCGGCCGAATTCAGGGCCTCCGCCGCTGTTTCGGTACTGCTCCAATGGGGGTAGTTTGGACATTGTGTTCCCTGACTGGTCATTTTGGG GCTGGGTGGAGACGAACATAAGGCCATGGGAGAAAGTATTAGAGGATATCAAAGAAGGGAACCAAAGAATCAAATGGAGGGATAGATTGCCTTATGCCTA CTGGAGAGGTAATCCAACGGTGGCCGCAGCTCGAAAGGATCTGCTCAAGTGTAACGTTACTGACAAATACGATTGGAGCACTCGTTTGTACAAGATATAC ATAGAAGGATGGGCGTGGTCCGTGAGCGAGAAGTACATCTTAGCATGCAACTCGATGACCCTCTACATTCGATCGTCGTTCCATGATTTCTACATTAGAG GGATGTCCCCCTTGAAGCACTATTGGCCTATTCGTGACAACTCCAAGTGTTCTGCTCTTAAACATGCTGTTGATTGGGCCAATAACAACACCCAAGAGGC AGAAGCTATAGGGGAAGCGGGGAGCAAGTTCGTGTTCGAGGAGATGAAGATGGAGTTCGTGTACGATTACATGTTCCACCTTTTGAGCGAATACTCGAAG CTGTTGAGGTTCAAACCCACCGTGCCTCCCGGAGCTTTGGAAGTGACCTCAGAAGCAATGGCTTGCCACCAAAACGGGACGTACAGAGAGTTCATGATCG AATCGATGGTCAAGTCTCCGAGTGATTCCGATCCGTGTGAATTGCCTCCTCCATTTGATCCTCAGGAGCTTCGAGAGTTTTGGGATGGGAATGTGAAGGG AAGTCAGAAAGTTGAGGCTTGGGAAGATGAGTATTGGAGAAACCAGACCAAACCGAATTGA
AA sequence Show only first row Show all	>Lus10037864 pacid=23163930 polypeptide=Lus10037864 locus=Lus10037864.g ID=Lus10037864.BGIv1.0 annot-version=v1.0 MTTTRYERILKPSAASNSSSSPVKSRHQSTIVFLLFFFFVFLFGILHFSGFAKDSSSVGGFISVPQVNSGARGCWQDFSVRCPTSPAGTTSTDWTYPTTH NTTRPSNLTCPFYFRWIHEDLRHWKVTGVTMEMVERGRRSAHFRLVVVEGRAYVEKYRQAIQTRDVYTLWGILQLLRRYPGRVPDFELLFDCDDLPVVRA KDYRRPNSGPPPLFRYCSNGGSLDIVFPDWSFWGWVETNIRPWEKVLEDIKEGNQRIKWRDRLPYAYWRGNPTVAAARKDLLKCNVTDKYDWSTRLYKIY IEGWAWSVSEKYILACNSMTLYIRSSFHDFYIRGMSPLKHYWPIRDNSKCSALKHAVDWANNNTQEAEAIGEAGSKFVFEEMKMEFVYDYMFHLLSEYSK LLRFKPTVPPGALEVTSEAMACHQNGTYREFMIESMVKSPSDSDPCELPPPFDPQELREFWDGNVKGSQKVEAWEDEYWRNQTKPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45830		DTA2	downstream target of AGL15 2 (...		Lus10037864 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	5.3	0.8713
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	7.9	0.8693
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	8.1	0.8692
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	10.4	0.8678
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	10.5	0.8634
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	13.9	0.8591
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	15.7	0.8436
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	16.2	0.8431
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	18.5	0.8387
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	19.7	0.8133

Compare expression of checked genes

Lus10037864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.