Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 776 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 751 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 705 / 0 ARK3 receptor kinase 3 (.1) AT1G11340 692 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 666 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 660 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 653 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 637 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11300 618 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 594 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038557 [exp] 1535 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 803 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 801 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 800 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 785 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 772 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 771 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 764 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 763 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125100 [exp] 988 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 903 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 856 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 847 / 0 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 846 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 845 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 841 / 0 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 834 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 830 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414200 [exp] 830 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10037865 pacid=23163687 polypeptide=Lus10037865 locus=Lus10037865.g ID=Lus10037865.BGIv1.0 annot-version=v1.0 ATGGAGAATGCATTAACAATAATGCTGCTGTTAGCTGCTGCGTTAATGCGCTCTTGTGTCGCCCCGTATACAATTGTTGACACGATTGCTCCAGGGCAGT CTATCAAGGACGGACAAACCTTGGTTTCCAGTGGCGAGTCTTTCGAGCTAGGCTTCTTCAGTCCTGGAACTTCAGCATCACGCTACTTGGGCATCTGGTA CAAGAAAATCGCCACCGGAACTGTTGTGTGGGTAGCTAACAGAGAAACTCCAATCCTGGATAGCTCAGGAGTCCTCAAACTCTCTTCACAAGGACTTCTT TACCTCATCCAGACCACCACCAATCGCACCGTCTGGTCATCATCATCATCATCAAATGTGGACAAATTATTAGCAAACAGTCATCAGCAGGCTGCCCAGC TCTTGGATTCAGGAAATTTCGTCGTAGCAGATGCTTATAATAATTACTTGTACCAGAGCTTCGATTACCCGACTGACACCGCCTTGCCTGGAATGAGACT GGGGAAAAACCTCATGACAGGATTAGATTGGTCAATAACGTCATGGAAATCGTTGAACGATCCAGCGAAAGGAGAATACTCTTTAGGAATCGATCCCACT GGGTACCCGCAAATGGTGGTGAGGCAAGGGAATGCTACAATCTTCAGGGTAGGATCCTGGAACGGGATCCGGTTCACCGGAACCCGGAGGCAGCAACAGA ATTCTATCTGGGAATACAAATTCGTGTTCGACGAACGAGAGGTATCGTTACAGACATCCCTCGTGAACAAGTCTGTGCCGTCAAGATTGGTGGTGAACGC ATCTGGAGCCACTGGGAGGCTGTACTGGAAAGACGACAAACAAGGTTGGGTGGTTTACTACATGCTGGGTGCGGACCAGTGTGACCAGTATTCCAAATGT GGTGTCAATGCAAGGTGTGACATTGACGGCACTACATATTGTAAATGCTTAGATGGGTTTCGACCCAAATCGTCCACCGATTGGGCGGTTCAGGACTGGT CGAGCGGGTGTGCAGCGGCCAGTCCTTTGAGTTGCAGGAAAGGTGAAGGGTTCGTTCGACTCGAGCAAATGAAGCTGCCTGACACTTCACGATCATGGTT CGACCATTCGATGACCCTCCGTGATTGTAAGAAGAAGTGTCTGAGAAACTGTTCGTGTACGGCTTACACGAGTTTGGATGCGTCGGGTGGTGGGAGTGGA TGCTTGATTTGGTTTGGTGATATAGTTGACTTGAGAGGGTTTCCTGAAACCGGCCAAGATCTCTATGTCAGAGTTTCTGCCTCCTACTTAGGTGCTATGA AGAGGAAAACGAGAAAGCAAGAAGGGAAGAGGACTGGGCTAATGGTATGTTCATTAGCAATGGTGGTGACAGTTATAGTATTGGGATGGAGCCTTTGCTT CAGGGGAATCAAACGAAGATTTCAAGGTAAAAAGAAGTCCTCCATGGGAAAGGGCTACAATAATGATGACTTGGAGCTGCCAATATTCGATTTTAACACG ATCATGAATGCCACCGGTAACTTTTCCACAGATAACAAGCTTGGAGAAGGCGGATTTGGACCTGTTTACAAGGGAATATTGCTTGACGGGCAAGAGATAG CCGTGAAACGGCTATCAATGAGCTCTGGCCAAGGTCTGGAAGAGTTCAAGAATGAAGTCGTTCTGATATCAAAACTTCAGCACAGGAATCTAGTTAGACT GCTTGGTTGCTGCATCGAAGGGGACGAAAAAATGTTGGTCTATGAGTACATGCCCAACAAAAGTTTGGACTACTTCATCTTTGATGAATCGAGAAGGCAA GCGTTGGACTGGTCTAGGCGAATCAGCATTATCGAGGGAATTGCGAGAGGGCTGTTGTATCTCCATCAGGATTCCAGGCTGAGAATCGTCCATAGGGATT TGAAAGCTAGTAATGTTCTCCTAGACAATGACTTGAACCCAAAAATTTCTGATTTTGGAATGGCAAGAATGTTCGGCGGAGATCAAACCGAGGATAGTAC AAACAGAGTCGTTGGAACATTCGGGTATATGGCACCAGAATACGCGATTGATGGGCTCTTCTCGATGAAATCGGACATCTTCAGCTTTGGAGTATTGGTG TTGGAAGTAGTGACAGGAAAGAAAAACAGAGGATTTTTTACCATGGATCATGGTCTCAATCTTCTTGGACACGCATGGAAGCTGTGGATGGAAGAGAAGC CATTGGAAGTCGTTCGAGAGGAGTATCGGGCTGGGACGATTGGGATCGTTGATGTGGTGAAGAGACACATTCAAGTGGGGTTGTTGTGCGTTCAGCGGGA GCCTGAAGATCGGCCGACCATGTCGTTGGTGGTGCTGATGTTGGGGGGTGACAGCGTGCTACCAGAACCTAAGCAGCCAGGGTTCTTCTCTGAAAGAAGG TTGCCAGAGATGGAAGAATGTTGTTCAAACCGTTACTCTAATTGCAAATCTCGTTCTATCAGTGAAATCACCGCAACTGAGTTGCTGCCTCGCTAA
AA sequence Show only first row Show all	>Lus10037865 pacid=23163687 polypeptide=Lus10037865 locus=Lus10037865.g ID=Lus10037865.BGIv1.0 annot-version=v1.0 MENALTIMLLLAAALMRSCVAPYTIVDTIAPGQSIKDGQTLVSSGESFELGFFSPGTSASRYLGIWYKKIATGTVVWVANRETPILDSSGVLKLSSQGLL YLIQTTTNRTVWSSSSSSNVDKLLANSHQQAAQLLDSGNFVVADAYNNYLYQSFDYPTDTALPGMRLGKNLMTGLDWSITSWKSLNDPAKGEYSLGIDPT GYPQMVVRQGNATIFRVGSWNGIRFTGTRRQQQNSIWEYKFVFDEREVSLQTSLVNKSVPSRLVVNASGATGRLYWKDDKQGWVVYYMLGADQCDQYSKC GVNARCDIDGTTYCKCLDGFRPKSSTDWAVQDWSSGCAAASPLSCRKGEGFVRLEQMKLPDTSRSWFDHSMTLRDCKKKCLRNCSCTAYTSLDASGGGSG CLIWFGDIVDLRGFPETGQDLYVRVSASYLGAMKRKTRKQEGKRTGLMVCSLAMVVTVIVLGWSLCFRGIKRRFQGKKKSSMGKGYNNDDLELPIFDFNT IMNATGNFSTDNKLGEGGFGPVYKGILLDGQEIAVKRLSMSSGQGLEEFKNEVVLISKLQHRNLVRLLGCCIEGDEKMLVYEYMPNKSLDYFIFDESRRQ ALDWSRRISIIEGIARGLLYLHQDSRLRIVHRDLKASNVLLDNDLNPKISDFGMARMFGGDQTEDSTNRVVGTFGYMAPEYAIDGLFSMKSDIFSFGVLV LEVVTGKKNRGFFTMDHGLNLLGHAWKLWMEEKPLEVVREEYRAGTIGIVDVVKRHIQVGLLCVQREPEDRPTMSLVVLMLGGDSVLPEPKQPGFFSERR LPEMEECCSNRYSNCKSRSISEITATELLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27300			S-locus lectin protein kinase ...		Lus10037865 [exp]	0	1
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	1.0	0.8388
					Lus10011908 [exp]	7.9	0.7322
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10008041 [exp]	8.2	0.7481
AT4G25040			Uncharacterised protein family...		Lus10043192 [exp]	10.1	0.6057
					Lus10016514 [exp]	14.0	0.6817
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10032941 [exp]	15.5	0.6571
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	18.0	0.7247
					Lus10017763 [exp]	18.3	0.6772
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	19.0	0.6782
AT2G26975			Ctr copper transporter family ...		Lus10017205 [exp]	20.6	0.6602

Compare expression of checked genes

Lus10037865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.