Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54430 229 / 5e-73 ATPHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G27320 217 / 4e-68 ATPHOS34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G11360 203 / 7e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT3G21210 131 / 9e-33 zinc ion binding (.1) AT3G17020 52 / 8e-08 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03270 42 / 0.0002 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G53990 40 / 0.0007 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039730 [exp] 191 / 2e-57 AT1G11360 288 / 3e-98 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10031594 [exp] 177 / 2e-52 AT1G11360 257 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10038561 [exp] 169 / 8e-50 AT1G11360 224 / 7e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10033749 [exp] 165 / 7e-48 AT1G11360 245 / 1e-81 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10018515 [exp] 81 / 2e-18 AT1G11360 127 / 9e-38 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10016900 [exp] 62 / 5e-10 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10037761 [exp] 53 / 4e-08 AT3G17020 224 / 4e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10006701 [exp] 50 / 6e-07 AT2G47710 218 / 1e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10022602 [exp] 48 / 2e-06 AT3G53990 225 / 2e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125500 [exp] 266 / 3e-87 AT5G54430 237 / 3e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.001G409100 [exp] 246 / 2e-79 AT5G54430 226 / 2e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.011G039800 [exp] 206 / 4e-64 AT1G11360 269 / 3e-91 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.013G150200 [exp] 178 / 3e-53 AT1G11360 209 / 1e-67 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.019G119400 [exp] 166 / 3e-48 AT1G11360 164 / 2e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.010G144100 [exp] 53 / 4e-08 AT3G17020 234 / 3e-80 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G092700 [exp] 47 / 5e-06 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.010G064800 [exp] 43 / 0.0002 AT4G13450 194 / 4e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.010G140200 [exp] 41 / 0.0008 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10037867 pacid=23163784 polypeptide=Lus10037867 locus=Lus10037867.g ID=Lus10037867.BGIv1.0 annot-version=v1.0 ATGCTTACGTGTCAGTTAAAAAATTTGTGTAAATGCTTAATATGTATTGTTGATGATGTTGACGAGAGTTTGGTGTTCCCCAAACGCGTGCTCATTGCTC AACAGTCACCATTCCCCGCTAAACTTCCTCTAGAAACTCCCTTCTTCCTCTCCTTCGCGGCAACCATGAATCCTCAGCAGCAACAACTCGTCGATCCCGA TCACCCTCAGCTCCCTACCATCAAGATCCATCACCCGTCCTCCCCTCGCCACTCTCACCACCACCACCACCATCACATCTCCTCCACCCCGACTCCAACC GCCGGCGCCCGCCGCAAGATTGGTGTCGCCGTTGACCCATCCGACGAGAGCGCCTACGCTGTCAAGTGGGCTGTCGATCACTACATCCGCCCAGGCGATG CCGTTGTCCTCCTCCATGTCAGCCCCACTTATGTTCTCTTTGGCGCTGATTGGGGCCCACTCCCTTTGTCCACTCCCACCCAAACCCCTCGCAACGGCGC CAGCGATCCTCCCAACACCGAAAATATGGGTAATCACTCCAGCTCTCTGAACGATGATCGCCGGGGCAGTGACTCCGACAGCGGTCGCGTACAGCCGCAT GGGCAGGATGATTTTGCCATGTTCACGGCGTCCAAGGCTGCGGATATCTCCAAACCGTTGAAGGATGCGCAGATCCCTTATAAGATCCATATAGTGAAAG ACCATGATATGAAGGAGAGGTTGTGCTTGGAGGTGGAGAGACTGGGATTGAGTGTGGTAATCATGGGAAGTAGAGGCTTCGGAGCTGCCAAGCAGGGCAG CGATGGCAGGCTTGGCAGCGTTAGCGATTATTGTGTTCATCACTGTGTTTGTCCTGTGGTTGTGGTTAGGTTCCCTGAAGACAAAGATGAATCAGAAGGC CCCCAGCCTGTGGTCAATGTGCATCTGCACGAGGATGAGGAAGAAGTGCCACATCTCAAAGGAATTACTGGATGGAACTTGTGTAGGATGTTCCATGTGG GTATGCATTTACGGGCTGAGGGTGTCATATGTTGCACAATAGCAAGGATTCAATTGCCATTCTATGCAATATCTGGTGATAACAGGGGGATTGATGTGCA TGTGATGGCTGGAGCTGCTCACCCAGCATCAGTGGGTGGAGCTGTTGGGTGTTGTGAGGGAGGGTTGAATGGATGCTGGAGTCCAGCAGGAGTTAGATTA AATGGTGGGGATCATAAGCAGCAATGTGTTATAACTAAATATTACTCTATGATGCCATCTGAGTGTTTGTTTGAGATTTTACCTCTTCATTGTGTCAGCT CATAA
AA sequence Show only first row Show all	>Lus10037867 pacid=23163784 polypeptide=Lus10037867 locus=Lus10037867.g ID=Lus10037867.BGIv1.0 annot-version=v1.0 MLTCQLKNLCKCLICIVDDVDESLVFPKRVLIAQQSPFPAKLPLETPFFLSFAATMNPQQQQLVDPDHPQLPTIKIHHPSSPRHSHHHHHHHISSTPTPT AGARRKIGVAVDPSDESAYAVKWAVDHYIRPGDAVVLLHVSPTYVLFGADWGPLPLSTPTQTPRNGASDPPNTENMGNHSSSLNDDRRGSDSDSGRVQPH GQDDFAMFTASKAADISKPLKDAQIPYKIHIVKDHDMKERLCLEVERLGLSVVIMGSRGFGAAKQGSDGRLGSVSDYCVHHCVCPVVVVRFPEDKDESEG PQPVVNVHLHEDEEEVPHLKGITGWNLCRMFHVGMHLRAEGVICCTIARIQLPFYAISGDNRGIDVHVMAGAAHPASVGGAVGCCEGGLNGCWSPAGVRL NGGDHKQQCVITKYYSMMPSECLFEILPLHCVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	0	1
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	1.0	0.9274
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	3.2	0.9198
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	3.2	0.9048
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	5.5	0.9188
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	6.2	0.8881
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10009422 [exp]	6.5	0.9146
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	6.6	0.9043
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	6.6	0.9174
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	6.7	0.9165
AT5G57460			unknown protein		Lus10000167 [exp]	9.2	0.9096

Compare expression of checked genes

Lus10037867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.