Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038562 [exp] 260 / 3e-87 ND 45 / 2e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G408900 [exp] 56 / 3e-09 AT5G08240 52 / 1e-07 unknown protein Potri.005G092400 [exp] 50 / 5e-07 AT5G08240 100 / 9e-25 unknown protein Potri.007G071900 [exp] 47 / 5e-06 AT5G08240 92 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037868 pacid=23163717 polypeptide=Lus10037868 locus=Lus10037868.g ID=Lus10037868.BGIv1.0 annot-version=v1.0 ATGCAGGCAAAGAAAATCCGGAAGAGAAGGAACGAAAAGAAAGGAGGGAATAACGAGGAGTACCTCGCAGTTGGAAATGTGAAGCAGCCAACATCAATGG GAAACGAATCGTTAAGCCCATCGACAACAAAATTCAAAAACGGCGACGTAGAACCGAATGAAGTTTCACTTTCATCAACAACATTTCCACCGAACTCAAC ACCATCCTTGACAACAATGAGCATGTCATCCAATTCAACCTTCTCCAGCACCAACTCCTCCTCCACCGACAAGACGACGACTCTACCACCCTCCTTGGCA GCTGATGCGGTGGCCGGAGCAGCAGCTACCACTGCCCCCAAGATAATCCTCCTACAGCAGCAGCAGCAGCAGCAGCACAAGGTGCTGGACCCTAATGCAG CGGTGGTTGGGAAAGGGGGGTGTAGCTCTAACATAGGACTATGTTTGGTCGCAGTGAGTCTAGTGGTGTTGGTGTTTTGGGGGAAGATATGCGCAATCAT GTTCACTTCCACATGGCTCTTCTTCGTCCCTCATTGTATCCCTGGTACGGCTACATTGTCTGGCCGGATTGGAGCTTATTACCGTAGGATTGATCCTGAG GACTTCAACAAGGATCATCAGGTGGTGGCTACCGCCGAAGGCTTCGTTGAGCGGAGTCGCAATCGGGCACGACGATGGGTTGGTGGCCTTAAAGCAAGAT CATGA
AA sequence Show only first row Show all	>Lus10037868 pacid=23163717 polypeptide=Lus10037868 locus=Lus10037868.g ID=Lus10037868.BGIv1.0 annot-version=v1.0 MQAKKIRKRRNEKKGGNNEEYLAVGNVKQPTSMGNESLSPSTTKFKNGDVEPNEVSLSSTTFPPNSTPSLTTMSMSSNSTFSSTNSSSTDKTTTLPPSLA ADAVAGAAATTAPKIILLQQQQQQQHKVLDPNAAVVGKGGCSSNIGLCLVAVSLVVLVFWGKICAIMFTSTWLFFVPHCIPGTATLSGRIGAYYRRIDPE DFNKDHQVVATAEGFVERSRNRARRWVGGLKARS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037868 [exp]	0	1
					Lus10038051 [exp]	4.2	0.9633
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001432 [exp]	5.5	0.8547
AT3G19920			unknown protein		Lus10010181 [exp]	5.8	0.8269
AT5G56990			unknown protein		Lus10029528 [exp]	6.0	0.9633
					Lus10003825 [exp]	7.3	0.9633
AT5G01660			unknown protein		Lus10040599 [exp]	8.5	0.9633
					Lus10015336 [exp]	9.3	0.8634
					Lus10029261 [exp]	9.5	0.9633
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	10.4	0.9633
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	11.2	0.9633

Compare expression of checked genes

Lus10037868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.