Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11390 653 / 0 Protein kinase superfamily protein (.1) AT1G61640 607 / 0 Protein kinase superfamily protein (.1.2) AT3G07700 133 / 2e-32 Protein kinase superfamily protein (.1.2.3) AT1G79600 117 / 4e-27 Protein kinase superfamily protein (.1) AT5G64940 113 / 8e-26 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 109 / 8e-25 Protein kinase superfamily protein (.1) AT1G71810 106 / 1e-23 Protein kinase superfamily protein (.1) AT5G50330 104 / 2e-23 Protein kinase superfamily protein (.1.2) AT4G24810 100 / 3e-22 Protein kinase superfamily protein (.1.2.3) AT5G24970 101 / 4e-22 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018416 [exp] 648 / 0 AT1G11390 818 / 0.0 Protein kinase superfamily protein (.1) Lus10002591 [exp] 629 / 0 AT1G11390 796 / 0.0 Protein kinase superfamily protein (.1) Lus10006363 [exp] 129 / 5e-31 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 129 / 1e-30 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 116 / 1e-26 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 115 / 2e-26 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10032628 [exp] 107 / 5e-24 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035701 [exp] 104 / 7e-23 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 103 / 1e-22 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032800 [exp] 687 / 0 AT1G11390 860 / 0.0 Protein kinase superfamily protein (.1) Potri.011G041500 [exp] 681 / 0 AT1G11390 879 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 129 / 7e-31 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G075100 [exp] 119 / 7e-28 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 115 / 2e-26 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.005G083200 [exp] 110 / 6e-25 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 107 / 8e-24 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.015G091000 [exp] 103 / 4e-23 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 102 / 1e-22 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G275600 [exp] 97 / 1e-20 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10037869 pacid=23163654 polypeptide=Lus10037869 locus=Lus10037869.g ID=Lus10037869.BGIv1.0 annot-version=v1.0 ATGAGTTCAACGCCAACCTTCGCCCGAGTCATTCCTGTTTTCCTGAAGAAAATGAAGATCCCAGCGAAGGCCATCCTCCGGACCGTGTACTATCGTCAAC CTATGGTGGCCGACGATACTATTGCTGGATCGTTTTCTGTTGGAAATGCTAGGACAATTGGACATTCTTTATTTCTCAACAAAAATATAAGCTTATCAGG ATTCAGTAATGGTGGTGGAACTCATTCCCTTCGAGAGTTGCCATTCTCTCAGTGGAGATTTTACTATCGGCATAAACATTCAATTGGAAGATATGCTCAT TTCATAAGGCATAAATTCATCCAGAACTTGGATAAGAGTGCTGGTCATAGAAGTTTCCATTCATTTTGTTCTAGAGGCAATATCTCTAATCATACGCAGA TTGCTTGGAAGAGGCTCTCTCAAATCTGTGCTTGCAATGTATCGGTTTCTTCTCCTCTAACTAAGGCAGCTGGTGCAGTGAGTCTGTCCCTGGTGAGATC TAATTTGCTTGCTCCAAGTATTATTGCCTTTATAGTTAGGGAGCTAGCATGGGGTCGGCAAACTGCTGAAGCAGAGGCCTTTTGGTCAGAGAATTCTATG TATACACCAGTGCACCGTGGACAATTTGTTGTGGCTTCGCTTATATTATGTGCTTTGGAGGGTATTATATTGTTAATCAGAGCCCTTTACTTGGCAATTC TCTTCTTGCCCTGCTTGGCTATGGCTCCATTTGCAGATTCCCTTGGCATCGAGTTCCGGAAAGCATGGCTCCATGTTGTTTATCTGACACTTGAAAACGC AGGTCCAGCATTCATTAAATGGGGCCAATGGGCTGCAACGAGACCAGACCTTTTCCCCCAAGATCTATGCTCTAAACTCACTAGACTTCACAGTAAAGCA CCGGCACATAGTTTCCCAATCACAAAGAAGACCATTGAAAATGCATTTGGACGCAGGCTTCGTGATATTTTTGAAGAGTTTGAGGAGGAACCTATAGCAT CTGGAAGTGTGGCTCAAGTTCATCGAGCTGTTTTAAAATACAGATCTTCCAATGGTGAGGTTGAGCCTCTAATGGTGGCAGTGAAGGTTCGACATCCGAA TGTTGGTCAAGCAATTAGAAGAGACTTCACGTTGATCAATTTTGTTGGCAAGATATCAAGCTGTATCCCTACATTAAAATGGTTAAGACTAGATGAAAGT CTGCAACAGTTTGCTGTCTTCATGATGTCTCAAGTTGATCTTGCGAGAGAAGCAGCGAGTTTGAGCCGCTTTAACTATAACTTCCGTAACTGGAAGGACG TTTCATTTCCAAGACCTTTGTATCCCCTCGTACATCCTGCTGTTCTTGTGGAAACTTATGAAAGAGGGGAAAGTATTGTGCATTATGTAGAAGGGAGCAA AGGCGATGAAAGAGTAAAAAGTGATCTAGCTCACATTGGGACTCATGCACTTCTGAAAATGCTACTGGTAGATAATTTTGTCCATGCAGACATGCATCCT GGTAATATTCTTGTTCGGACAATGGATGATGGGGTGTCACCTCAGCTCTTCAGAACAAAGCCCCATCTTGTTTTCCTAGACGTGGGAATGACTGCAGAAC TTCACAGGAGAGATCGGGTTAACTTGCTAGATTTCTTTAAAGCAGTTGCCATTCAGGACGGAAGAACTGCCGCAGAGTGCACCCTAAGATTATCTAAGAG GCAGCGGTGTCCAGATCCTGGCACTTTTATCCAGGAAATTGATAAACTGTTCAGCTCCTGGGACCCCCATGAAGGTAAAGAATCGCATCATGCCAATTAC ATGCAGCAGCTGCTGGAGTCGGTTAGACGTCATAAGGTCAACATCGATGGCCATGTTTGCACTGTGATAGTAACTACTTTGGTCCTTGAGGGGTGGCAGA GGAAGCTTGATTCAACGTACAACACCTTGAACACTCTCCAGACATTGTTGTTCAAGGTTGACTGGGCAGAGTCGCTCTCCTATACAATCGAAGGACTCAT GGCACCATGA
AA sequence Show only first row Show all	>Lus10037869 pacid=23163654 polypeptide=Lus10037869 locus=Lus10037869.g ID=Lus10037869.BGIv1.0 annot-version=v1.0 MSSTPTFARVIPVFLKKMKIPAKAILRTVYYRQPMVADDTIAGSFSVGNARTIGHSLFLNKNISLSGFSNGGGTHSLRELPFSQWRFYYRHKHSIGRYAH FIRHKFIQNLDKSAGHRSFHSFCSRGNISNHTQIAWKRLSQICACNVSVSSPLTKAAGAVSLSLVRSNLLAPSIIAFIVRELAWGRQTAEAEAFWSENSM YTPVHRGQFVVASLILCALEGIILLIRALYLAILFLPCLAMAPFADSLGIEFRKAWLHVVYLTLENAGPAFIKWGQWAATRPDLFPQDLCSKLTRLHSKA PAHSFPITKKTIENAFGRRLRDIFEEFEEEPIASGSVAQVHRAVLKYRSSNGEVEPLMVAVKVRHPNVGQAIRRDFTLINFVGKISSCIPTLKWLRLDES LQQFAVFMMSQVDLAREAASLSRFNYNFRNWKDVSFPRPLYPLVHPAVLVETYERGESIVHYVEGSKGDERVKSDLAHIGTHALLKMLLVDNFVHADMHP GNILVRTMDDGVSPQLFRTKPHLVFLDVGMTAELHRRDRVNLLDFFKAVAIQDGRTAAECTLRLSKRQRCPDPGTFIQEIDKLFSSWDPHEGKESHHANY MQQLLESVRRHKVNIDGHVCTVIVTTLVLEGWQRKLDSTYNTLNTLQTLLFKVDWAESLSYTIEGLMAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11390			Protein kinase superfamily pro...		Lus10037869 [exp]	0	1
					Lus10030178 [exp]	3.6	0.7746
AT3G12010			unknown protein		Lus10021085 [exp]	8.5	0.7319
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	30.4	0.7302
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10033013 [exp]	33.1	0.7145
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	54.6	0.6834
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	62.8	0.6834
AT3G14460			LRR and NB-ARC domains-contain...		Lus10005321 [exp]	65.6	0.6665
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	68.2	0.6583
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10032853 [exp]	88.4	0.6220
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	88.8	0.6096

Compare expression of checked genes

Lus10037869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.