Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20630 1216 / 0 PER1, ATUBP14, TTN6, UBP14 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) AT3G14400 47 / 4e-05 UBP25 ubiquitin-specific protease 25 (.1) AT1G04850 45 / 0.0002 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT1G51710 44 / 0.0005 ATUBP6, UBP6 ubiquitin-specific protease 6 (.1.2) AT5G22030 44 / 0.0006 UBP8 ubiquitin-specific protease 8 (.1.2) AT4G39910 43 / 0.0008 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038564 [exp] 1450 / 0 AT3G20630 1142 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10033243 [exp] 47 / 7e-05 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 47 / 8e-05 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10037827 [exp] 45 / 0.0002 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10035825 [exp] 45 / 0.0002 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 45 / 0.0003 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10043126 [exp] 45 / 0.0004 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10024043 [exp] 44 / 0.0004 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10041705 [exp] 44 / 0.0004 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G408800 [exp] 1300 / 0 AT3G20630 1236 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Potri.011G125800 [exp] 1291 / 0 AT3G20630 1258 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Potri.001G316400 [exp] 50 / 4e-06 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.017G056900 [exp] 50 / 4e-06 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G394600 [exp] 47 / 4e-05 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.007G063900 [exp] 46 / 0.0001 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.011G152500 [exp] 46 / 0.0001 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 45 / 0.0003 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.007G093600 [exp] 44 / 0.0004 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G074900 [exp] 44 / 0.0004 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10037870 pacid=23163831 polypeptide=Lus10037870 locus=Lus10037870.g ID=Lus10037870.BGIv1.0 annot-version=v1.0 ATGGAGACGGGCAACCTTCTGGAGCTACTCCGATCCAACCTCTCTCGGGTGCGCATACCGGAGCCCACCAACCGCGTCTACAAATCAGAGTGCTGCATCT CCTTCGATAACCCGAGATCAGAAGGCGGGTTGTTCATCGACATGAATACATTTCTTGCTTTTGGGAAGGATTGTGTGGCTTGGAACTATGAGAAAACAGG GAACCCTGTTTATTTGAATATAAAGCAAACAAGGAAGTCAATTCGGGAAGACAGGCCTTCAAAGAAACCGACCCTGTTGGCTATAGGTATTGAAGGGGGT TTTGACAACAACGATGCTGAGTATGACAAAAGTTACAGCATAGTGGTGCTTCCTGAATATGCTACCTTCCCGTTCCCTTCAGTGGAATTGCCAGAAAAGG TAAGAGTTGCTGTTGATGCTGTTTTAATGGCTGAAGGTGCTGAGCGGAGAGAGCAACTTGCTGCTTGGACGGCAGACAAAAAGAACGTTAGCACATATGC AATGAACTTAAAGCAGATTGATAATGGTGTCATTGTTCCTCCATCTGGTTGGAAGTGTATCAAATGTGATAAAAGAGATAATCTTTGGCTTAATCTTACT GATGGAATGATCCTTTGTGGCCGGAGGAATTGGGATGGAACTGGTGGCAACAACCATGCAATTGAACACTACAAGGAGACGGGTCATCCTCTTGCTGTTA AACTTGGGACAATAACTTCAGATCTGGAAGCAGCAGATGTTTACTCGTACCCCGAGGATGACAGTGTTTTGGACCCACTTCTGGCACAACATTTGTCTTT CTTTGGAATTGATTTTTCATCGTTAAAGAAGACTGAAATGACTACTGCTGAAAGGGAACTTGACCAGAATATTAATTTTGATTGGAATCGAATTCAAGAA AGTGGGCAGGATTTAGAACCAATTTTTGGGCCAGGTTATACAGGACTTGTTAATCTTGGCAACAGCTGCTATATGGCAGCAACTATGCAAGTTGTGTTCT CTACACAGTCCATCTGTACACGATACTACAAGAATCAAAGCTTGAAACTAGCATTTGAAATGGCTCCTGCTGATCCGACTGTAGACTTGAATATGCAGCT GACAAAGCTGGGACATGGTTTACTGTCTGGGAAATATTCTGTTCCTGCTACAGAGATAGATGACATAGCAGAATCTGCTACGTCTACTAGTACTAAACAT GAAGGGATACCTCCTCGCATGTTCAAAGCCGTTATTGCTGCAAGCCATCCCGAGTTTTCTTCTATGAGGCAGCAGGATGCATTGGAGTTCTTCTTACACT TTCTTGACCAAGTTGAGCGTGGGAATATCTCTAGACCTGAAGCAGATCCTTCAAGGAGCTTTAAGTTTGGTATTGAAGAGCGTATTCAGTGTTCTTCTGG AAAGGTTACATACAACCAAAGGCATGATTATATTCTTTCCCTGAATATTCCCTTGCATGAAGCTACCAACAGAGAAGAATTAGAAGCCTTCCAGAAATTA AAATCAAAAACAGGTTCTGAAGGGAAGAATGTTCCCAGCAATGAAATTGTACGTCCACGGGTACCTCTAGAAGCATGTCTGGCTAACTTCTCAGCTCCGG AGGAAATACAGGACTTTTACAGCACTGCTTTGAGGGCTAAGACCATGGCTATAAAGAAGGCTGGGCTAACTTCATTTCCTGATTATTTGGTATTACACAT GCGCAAATTTGTTATGGAGGAGGGATGGGTTCCCAAAAAGCTAGATGTCTATATAGACGTTCCTGACATCATAGATATAAGTCACATGAGAAGCAAGGGC CCCCAACCTGGGGAAGAGATTTTGCCAGACGGTGGTATGGCTTCTCCTAAAGCTGCTCTGATTAAACTTAGGCTCTGTGACATTTTAGATGGACATCTGA ATAGGAGGCCTGAGACTGAGGCAAAATCAAATGAAGTTGTGGCGAATGAAGATATTGTTGTTCAGCTGATGTCAATGGGATTTGATGTCGTTCGTTGCCA AAAGGCTGCAATAAACACCTCAAACGCAGGGATAGAAGAGGCAATGAACTGGTTACTTTCTCATATGGATGACCCAGATATAGATGCTCCAATTTCCCAA GGTTCTGTAGAAGCTGAAGTTGTAAACCAGTCAAAACTTGATACTTTGATCTCATTTGGATTTGCAGAAGAAGTAGCTCGGAAGGCACTGAAGGCTTCGG ATGGTGACATTGAGAAAGCTACGGATTGGATATTCAACAATCCTGGAGCCTCTGGGCCATCTGACATGGATACAACAACTAGTTCAAGCAGTAGAGCTGC GAATGATAATGTTGGACTAGCTGATGGAGGAGGAAAATACCGGCTGTTTGGAATAGTGTCGCACATTGGAACCTCGACGCAGTGTGGACATTATGTTGCT CACATCCGTAAGGAAGGAAGATGGGTGATTTTCAACGACACTAAGGTAGGAGTTTCCGTAAACCCTCCCAAGGACATGGGCTACTTGTACTTCTTCGAGA GGCTGCATGGGTAA
AA sequence Show only first row Show all	>Lus10037870 pacid=23163831 polypeptide=Lus10037870 locus=Lus10037870.g ID=Lus10037870.BGIv1.0 annot-version=v1.0 METGNLLELLRSNLSRVRIPEPTNRVYKSECCISFDNPRSEGGLFIDMNTFLAFGKDCVAWNYEKTGNPVYLNIKQTRKSIREDRPSKKPTLLAIGIEGG FDNNDAEYDKSYSIVVLPEYATFPFPSVELPEKVRVAVDAVLMAEGAERREQLAAWTADKKNVSTYAMNLKQIDNGVIVPPSGWKCIKCDKRDNLWLNLT DGMILCGRRNWDGTGGNNHAIEHYKETGHPLAVKLGTITSDLEAADVYSYPEDDSVLDPLLAQHLSFFGIDFSSLKKTEMTTAERELDQNINFDWNRIQE SGQDLEPIFGPGYTGLVNLGNSCYMAATMQVVFSTQSICTRYYKNQSLKLAFEMAPADPTVDLNMQLTKLGHGLLSGKYSVPATEIDDIAESATSTSTKH EGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERGNISRPEADPSRSFKFGIEERIQCSSGKVTYNQRHDYILSLNIPLHEATNREELEAFQKL KSKTGSEGKNVPSNEIVRPRVPLEACLANFSAPEEIQDFYSTALRAKTMAIKKAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDISHMRSKG PQPGEEILPDGGMASPKAALIKLRLCDILDGHLNRRPETEAKSNEVVANEDIVVQLMSMGFDVVRCQKAAINTSNAGIEEAMNWLLSHMDDPDIDAPISQ GSVEAEVVNQSKLDTLISFGFAEEVARKALKASDGDIEKATDWIFNNPGASGPSDMDTTTSSSSRAANDNVGLADGGGKYRLFGIVSHIGTSTQCGHYVA HIRKEGRWVIFNDTKVGVSVNPPKDMGYLYFFERLHG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10037870 [exp]	0	1
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	1.7	0.8878
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	2.8	0.8767
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	4.8	0.8271
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	6.9	0.8271
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	7.7	0.8642
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	12.7	0.7922
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	15.0	0.8529
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	17.9	0.8474
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	20.7	0.8122
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10003518 [exp]	21.8	0.8270

Compare expression of checked genes

Lus10037870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.