Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27340 709 / 0 Met-10+ like family protein (.1) AT3G56120 210 / 7e-61 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G04670 49 / 1e-05 Met-10+ like family protein / kelch repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017739 [exp] 183 / 7e-51 AT3G56120 593 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033083 [exp] 177 / 8e-49 AT3G56120 587 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002756 [exp] 54 / 4e-07 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10009743 [exp] 45 / 0.0002 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1) Lus10000172 [exp] 44 / 0.0002 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125700 [exp] 740 / 0 AT4G27340 720 / 0.0 Met-10+ like family protein (.1) Potri.018G072200 [exp] 202 / 1e-57 AT3G56120 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G408950 [exp] 65 / 9e-13 AT4G27340 71 / 1e-15 Met-10+ like family protein (.1) Potri.004G015200 [exp] 49 / 1e-05 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Potri.001G195300 [exp] 44 / 0.0002 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02475 [flax] [poplar] Met_10 Met-10+ like-protein
Representative CDS sequence Show only first row Show all	>Lus10037871 pacid=23163742 polypeptide=Lus10037871 locus=Lus10037871.g ID=Lus10037871.BGIv1.0 annot-version=v1.0 ATGAACTTCAGTCCGATGGTTTCCAAGCTCGTACTTGGCCCCAGTTCTCCCCTTTCTTTAGCCATTTTTCCATCAACCTCCCATTTTTGTTCTTTCCCCA GACCTTATTTCTCCAGATGCAGTGTCGTTGCTCTCTTCTCCACGTCTGATACGAATGCCCTTCCTTATGGACCTTCTCTGCTAAAGGGAAAACTTCCGCC TTCTGAGCAGCAGAACCAGAAGCAACAGTTACTGTACCAGTGTAAAGGAAAGGAGGAGGAAATAGAAGAAGAGGGCTATAGTGTGCTTGATAATGAGCAG TTTACTAGGGTGTTTGACATAGCAGCACTACGGGTTCCTGCCAAATACTGTTTCTCTCTTGAGAGTAGAATTAGAGGTCATTTGCTGAATTGGCCTAGAG TTCGCAACATTGCCAGAGTTCCTGGTGATGAGGTGAGAGAGGAACTTGCTCCCTTGTTAGGACAGCCACTCAGTGGGGTTGAAGACGAAGAAGTGGGTAA GCTCACTTCTTTGCAAAGGAGAATGTATGGAGAGGCAGAGGGTGATGGTGAGGAATTGAGCTCAGTTCTTTATAGGGATAGATTGGCGAAGGAGTTTAAT GTGAAAGGGTTTTTTAAGTTTCGGAACTTGGCAAGACTTTCAAGGCCTAAGAAGAGGAATTTAAAGCAAAACGAAGCAAATGCTGATGGACCGCGAAGGT GCGGGGGCAATGAGTTTGCAATGGTGGAAGTTGTGGAAGAAAACGATGGAGATGAGTGGAAGGGCTTGCTGGGGGATGGATTCAAAGCAAGGAAGAAATG GATGGGCTCAACGAGGTTGTTGCTTTTGGATGAGAGATATGCTGACAAGACTTTGGAAGAGTTGCCCCAAGCTGTCAAGTCTGCTTTGGAGGAAGCTATC ATGGAGAACACAGCATCTGCTTTTGAGGTTGTTAAATGCAAGCTGACCCTGTTTTATGATTACTGGCTGATGAATGAGATTTTGGAGGCCTTGCTACCCA AAGATATGATAACTCCATCTGCTTTTGAAACAATTGGGCATATTGCACACCTAAACCTGAAAGACGAACACCTGCCATATAAGAAGGTTATAGCTAAGGT GGTTGTTTTGGATAAGAACAAACCAAAGATACAAACGGTAGTGAATAAGGTTGATGCGATAAATAATGACTACAGAACGATGCAACTTGAAGTGTTAGCG GGTAATCACTCACTTGTGACGATGGTAGTTGAAAATGGATTGAAATTCCATGTTGATCTAGCAACAGTGTACTGGAACTCCCGGCTAGCAACCGAAAGGC AAAGGCTTTTGCAGGGATTTACATGCAAAGATGTTGTTTGTGACGTATTCTCCGGGGTTGGCCCGATAGCTATATCTGCTGCAAGGGTAGTAAAAAGGGT TTACGCCAATGACTTGAACCCTCAAGCTGTTGATTACTTGGACAGGAATAGCGTCCTCAACAAGCTTGGGAAGAAGGTTAAGGTGTTTAACATGGACGGG AGAAGGTTTATCAATGCAATGTTTATGAGTGAGAGAGCCGAGTCAATCACACAGGTGGTGATGAACCTTCCAAAAGACGCAGTGGAATATCTAGATGCTT TCAGGGGTGTTTTCCGAAATAAGACTTTGAATGAAGGTTATATTTTCCCGAAGATCCACGTGTACGGGTTCTCCAAAGCTAAAGATCCAGAATTTGACCT CCATGAGCGGATAAGAATGGCAATAGGAGAGGTGGGAGTGAGTGTAGAGATGCGGAGAGTACGATTGGTTGCGCCGGGGAAATGGATGCTATGTGCTTCC TTCCTTCTACCTGCTTCTGTAGCATTTGCAGCCGCCGCCGACGATACACAACAGCGTCAACCTTTGAGTCAGTAA
AA sequence Show only first row Show all	>Lus10037871 pacid=23163742 polypeptide=Lus10037871 locus=Lus10037871.g ID=Lus10037871.BGIv1.0 annot-version=v1.0 MNFSPMVSKLVLGPSSPLSLAIFPSTSHFCSFPRPYFSRCSVVALFSTSDTNALPYGPSLLKGKLPPSEQQNQKQQLLYQCKGKEEEIEEEGYSVLDNEQ FTRVFDIAALRVPAKYCFSLESRIRGHLLNWPRVRNIARVPGDEVREELAPLLGQPLSGVEDEEVGKLTSLQRRMYGEAEGDGEELSSVLYRDRLAKEFN VKGFFKFRNLARLSRPKKRNLKQNEANADGPRRCGGNEFAMVEVVEENDGDEWKGLLGDGFKARKKWMGSTRLLLLDERYADKTLEELPQAVKSALEEAI MENTASAFEVVKCKLTLFYDYWLMNEILEALLPKDMITPSAFETIGHIAHLNLKDEHLPYKKVIAKVVVLDKNKPKIQTVVNKVDAINNDYRTMQLEVLA GNHSLVTMVVENGLKFHVDLATVYWNSRLATERQRLLQGFTCKDVVCDVFSGVGPIAISAARVVKRVYANDLNPQAVDYLDRNSVLNKLGKKVKVFNMDG RRFINAMFMSERAESITQVVMNLPKDAVEYLDAFRGVFRNKTLNEGYIFPKIHVYGFSKAKDPEFDLHERIRMAIGEVGVSVEMRRVRLVAPGKWMLCAS FLLPASVAFAAAADDTQQRQPLSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	0	1
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	1.0	0.8684
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	2.8	0.8312
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	3.2	0.8117
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	5.5	0.7881
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	5.7	0.8237
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	5.9	0.8019
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	10.2	0.7779
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030658 [exp]	11.0	0.7935
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	12.2	0.8066
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	13.4	0.8129

Compare expression of checked genes

Lus10037871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.