Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54110 305 / 2e-104 ATMAMI membrane-associated mannitol-induced (.1) AT4G21450 286 / 9e-97 PapD-like superfamily protein (.1.2.3) AT4G05060 236 / 3e-77 PapD-like superfamily protein (.1) AT3G60600 61 / 6e-11 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 59 / 4e-10 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G45140 53 / 3e-08 PVA12 plant VAP homolog 12 (.1) AT1G08820 50 / 6e-07 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT5G47180 49 / 7e-07 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT2G23830 48 / 8e-07 PapD-like superfamily protein (.1) AT1G51270 49 / 2e-06 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002595 [exp] 290 / 1e-98 AT4G21450 389 / 4e-137 PapD-like superfamily protein (.1.2.3) Lus10018420 [exp] 288 / 7e-98 AT4G21450 383 / 6e-135 PapD-like superfamily protein (.1.2.3) Lus10039757 [exp] 262 / 2e-87 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10018534 [exp] 261 / 3e-87 AT4G21450 316 / 2e-108 PapD-like superfamily protein (.1.2.3) Lus10010360 [exp] 66 / 1e-12 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 66 / 2e-12 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 62 / 5e-11 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 62 / 1e-10 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10015885 [exp] 59 / 4e-10 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G408200 [exp] 315 / 9e-109 AT5G54110 322 / 3e-111 membrane-associated mannitol-induced (.1) Potri.011G041900 [exp] 291 / 6e-99 AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) Potri.011G126200 [exp] 284 / 1e-96 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.019G116400 [exp] 273 / 4e-92 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.004G033500 [exp] 270 / 2e-90 AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) Potri.013G147800 [exp] 266 / 3e-89 AT4G21450 266 / 5e-89 PapD-like superfamily protein (.1.2.3) Potri.002G144800 [exp] 66 / 2e-12 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.014G060900 [exp] 61 / 1e-10 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 60 / 1e-10 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.003G082500 [exp] 59 / 5e-10 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10037873 pacid=23163914 polypeptide=Lus10037873 locus=Lus10037873.g ID=Lus10037873.BGIv1.0 annot-version=v1.0 ATGGCGATTGCCGACAGGCAGCACAAGTCCAACGGCGACGGTAAGCTCTTTGGTTTGTGTCCCTTCTGGCAGTCAGCGAACGGCACTTCTAATTCCTCCT CCACTTCCTCTTCCACACAAAACTTGAACCACCTCGGTTACCACCACAGCACTCCAGGCTTGTACGGTAGCTCATCCTCGAAACCTCCGCCCTCCCCTGG TAAGACGGTTTCTTCCGTCGCCAGATCTCTTCTCCCTGCTCGCCGTCGCCTCCGCCTCGATCCTCTCAACCATCTCTACTTCCCTCATGAGCCAGGAAAA CAAGTGAGAAGCGCTGTGAAGTTGAAGAACACTAGCAGGTCTCATGTTGCCTTCAAGTTTCAGACGACTGCTCCAAAGAGCTGTTACATGCGTCCACCTG GTGGTGTTCTTGCTCCGGGAGAAAGCTTAATTGCTACTGTGTTCAAGTTTGTGGAGCAGCCAGAGAACGATAGTGATAAACAAGTATCGGAGCAGAAGAG CAAAGATAAGTTCAAAATAATGAGCTTGAAGGTTAAAGGAGGACTGGAGTATGTACCTGAGCTTTTCGATGAACAAAAGGATAAAGTAAGTGTGGAGAGG ATATTACGAGTAGTATTCCTAGATCCTGAGCGTCCTAATGCTGCATTGGAGAAGCTGAATCGGCAACTAGCAGAAGCAGAGGCCGATCTGGAAGCACGTA AGAAGCCACCGGTAGAGACAGGTCCCAAAGTTATCGGGGAAGGCCTCGTGATCGATGAATGGAAAGAGCGGAGAGAAAAGTACTTGGCCAGACAGCAAGT TGGAGCTGTGGATTCAACGTGA
AA sequence Show only first row Show all	>Lus10037873 pacid=23163914 polypeptide=Lus10037873 locus=Lus10037873.g ID=Lus10037873.BGIv1.0 annot-version=v1.0 MAIADRQHKSNGDGKLFGLCPFWQSANGTSNSSSTSSSTQNLNHLGYHHSTPGLYGSSSSKPPPSPGKTVSSVARSLLPARRRLRLDPLNHLYFPHEPGK QVRSAVKLKNTSRSHVAFKFQTTAPKSCYMRPPGGVLAPGESLIATVFKFVEQPENDSDKQVSEQKSKDKFKIMSLKVKGGLEYVPELFDEQKDKVSVER ILRVVFLDPERPNAALEKLNRQLAEAEADLEARKKPPVETGPKVIGEGLVIDEWKERREKYLARQQVGAVDST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Lus10037873 [exp]	0	1
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	9.3	0.8341
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	12.4	0.7924
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	14.9	0.7889
AT5G06440			unknown protein		Lus10013601 [exp]	16.5	0.7169
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	27.7	0.7632
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	29.9	0.7583
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10041361 [exp]	32.9	0.7576
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	35.7	0.7708
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	37.2	0.7521
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	40.0	0.7106

Compare expression of checked genes

Lus10037873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.