Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 53 / 6e-09 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT1G78390 46 / 1e-06 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G19170 43 / 2e-05 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G30100 39 / 0.0008 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009513 [exp] 104 / 5e-27 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1) Lus10042829 [exp] 87 / 2e-20 AT3G63520 207 / 2e-59 carotenoid cleavage dioxygenase 1 (.1) Lus10037286 [exp] 49 / 8e-08 AT4G19170 263 / 9e-86 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10019710 [exp] 48 / 5e-07 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 47 / 2e-06 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 46 / 2e-06 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10042481 [exp] 44 / 7e-06 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10029513 [exp] 39 / 0.0005 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042650 [exp] 126 / 1e-34 AT3G63520 198 / 3e-56 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239402 [exp] 114 / 2e-30 AT3G63520 208 / 1e-59 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043500 [exp] 110 / 4e-29 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043000 [exp] 110 / 7e-29 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239300 [exp] 100 / 1e-25 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239200 [exp] 86 / 2e-20 AT3G63520 135 / 3e-34 carotenoid cleavage dioxygenase 1 (.1) Potri.019G093400 [exp] 48 / 4e-07 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 47 / 8e-07 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 44 / 7e-06 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.009G060500 [exp] 42 / 4e-05 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10037874 pacid=23163669 polypeptide=Lus10037874 locus=Lus10037874.g ID=Lus10037874.BGIv1.0 annot-version=v1.0 ATGAAGACAGGAGAAGTGAAAGGGAAACCTCTTACAGGGCCTGATTTGTCCATGGACTTCCCAATCATCAATGACAACTTCACTGGGATCAAGCACAAGT ATGCTTACACCTTAGTAGTTGACCCTTTGGCAAGTTCTGTAGCAGGCATGACTAAATATGGTGGTCTAGCTAAGTTGACAAACCTAAGAATGATGTTGAT ATGCCTTGAATTATATATTATGATTAATATGGGGTTGAACTGGAACAAGGTGGAGGTTGAGCAACATAAGTTTCCAGAGCATGTATACTGCACTGGGAGT GCCTTCGTCCCCAACCAGGAAAACCCACAGGAAGAAGATTCTGGTTGGATAATTAGTTATGTTCATGATGAAGAGAAGGACGTTGGTGTCCGTTCATTCT ATTTCTATAGCTAG
AA sequence Show only first row Show all	>Lus10037874 pacid=23163669 polypeptide=Lus10037874 locus=Lus10037874.g ID=Lus10037874.BGIv1.0 annot-version=v1.0 MKTGEVKGKPLTGPDLSMDFPIINDNFTGIKHKYAYTLVVDPLASSVAGMTKYGGLAKLTNLRMMLICLELYIMINMGLNWNKVEVEQHKFPEHVYCTGS AFVPNQENPQEEDSGWIISYVHDEEKDVGVRSFYFYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10037874 [exp]	0	1
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	5.0	1.0000
					Lus10022518 [exp]	7.1	1.0000
					Lus10022214 [exp]	11.3	1.0000
					Lus10003536 [exp]	16.1	1.0000
AT5G22450			unknown protein		Lus10000530 [exp]	16.4	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	20.0	1.0000
					Lus10011078 [exp]	21.7	1.0000
					Lus10011425 [exp]	23.2	1.0000
					Lus10011642 [exp]	24.0	1.0000
					Lus10011832 [exp]	25.5	1.0000

Compare expression of checked genes

Lus10037874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.