Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64020 404 / 1e-141 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1) AT5G20680 375 / 1e-128 TBL16 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) AT2G37720 345 / 2e-117 TBL15 TRICHOME BIREFRINGENCE-LIKE 15 (.1) AT3G06080 147 / 3e-41 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 143 / 4e-40 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 140 / 1e-38 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G19160 137 / 2e-37 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G12060 130 / 2e-34 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G20590 124 / 2e-32 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G64470 123 / 2e-32 TBL12 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038577 [exp] 561 / 0 AT5G64020 502 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10027651 [exp] 360 / 4e-123 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10039914 [exp] 358 / 1e-122 AT5G20680 597 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10034039 [exp] 154 / 2e-43 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10004225 [exp] 144 / 4e-40 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10029430 [exp] 143 / 4e-40 AT3G11570 443 / 2e-155 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 139 / 3e-38 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10002430 [exp] 139 / 6e-38 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10000250 [exp] 135 / 9e-38 AT3G11570 428 / 7e-150 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064875 [exp] 460 / 4e-165 AT5G64020 478 / 4e-170 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.005G065100 [exp] 462 / 1e-162 AT5G64020 533 / 0.0 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.007G104300 [exp] 450 / 4e-159 AT5G20680 524 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.006G140300 [exp] 382 / 3e-132 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.008G203900 [exp] 135 / 7e-37 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G195800 [exp] 136 / 2e-36 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.001G010900 [exp] 130 / 2e-34 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G074800 [exp] 128 / 2e-34 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.006G071500 [exp] 128 / 7e-34 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.009G072800 [exp] 125 / 2e-33 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10037877 pacid=23163695 polypeptide=Lus10037877 locus=Lus10037877.g ID=Lus10037877.BGIv1.0 annot-version=v1.0 ATGCAGGACAAAACAATTGCCTTCATTGGAGATTCACTGGGCAGACAGCAATTTCAATCTTTGATGTGTATGGCGTCAGGTGGAGAATGGAGGATGGATG TGACAGACGTGGGAGCAGAATTTGGCCTTGTGAAAGCTCCAGGAGCCAAACGCCCAGATGGTTGGGCTTATCGCTTCTCAAACACCAACACAACCATATT GTATTACTGGTCAGCCAGTCTAGCTGACCTGGTGCCTTTAAATGCGAGTGACCAACAAAGTGATGTTGCGATGCATTTGGACCATGCCCCAGCTTTCATG AGACGGTACCTTGGTAGATTTGATGTGCTAGTTCTTAACACTGGGCATCACTGGAACCGAGGGAAGCTTAAAGCAAATAGGTGGGTGATGTACATAAATG GGGAGCCAATTGAAGAGAAAGCACCAGTGGATATGAACGTTGCCAAGAATCTTACAGTTCACAGTGTGGTAAGGTGGCTAGATTCGCAGATTCCTTCACA TCCTCGTCTCAAAGTGTTTTTCAGGACCATCTCACCAAGGCATTACCGTGGTGGGGACTGGAATACGGGAGGGAATTGCGATAATACCACTCCGATGACT AGAGGGAGCGGAACCTCAGAGGAGAAATCAATTGACGAGGTTGTTGAGTCGGCCGTTAAGGGTAGTAAGATAAAGCTGTTGGACATTACAGCCATATCTG AGCTTAGAGACGAGGCTCACATATCTAATTACAGTGCTAGGACCACAAATGGTGTAAGTGATTGCCTACACTGGTGCTTGCCTGGTATTCCAGACACATG GAATGAGCTCTTGGTTGCACAGATATAG
AA sequence Show only first row Show all	>Lus10037877 pacid=23163695 polypeptide=Lus10037877 locus=Lus10037877.g ID=Lus10037877.BGIv1.0 annot-version=v1.0 MQDKTIAFIGDSLGRQQFQSLMCMASGGEWRMDVTDVGAEFGLVKAPGAKRPDGWAYRFSNTNTTILYYWSASLADLVPLNASDQQSDVAMHLDHAPAFM RRYLGRFDVLVLNTGHHWNRGKLKANRWVMYINGEPIEEKAPVDMNVAKNLTVHSVVRWLDSQIPSHPRLKVFFRTISPRHYRGGDWNTGGNCDNTTPMT RGSGTSEEKSIDEVVESAVKGSKIKLLDITAISELRDEAHISNYSARTTNGVSDCLHWCLPGIPDTWNELLVAQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	0	1
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	1.0	0.9113
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	2.2	0.8696
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	2.4	0.8851
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	2.4	0.9036
AT3G13410			unknown protein		Lus10010298 [exp]	2.8	0.8613
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	4.0	0.8826
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	6.5	0.8306
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	7.3	0.8652
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	9.5	0.8204
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	9.9	0.8491

Compare expression of checked genes

Lus10037877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.