Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64020 40 / 0.0003 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038577 [exp] 0 / 1 AT5G64020 502 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065100 [exp] 58 / 2e-10 AT5G64020 533 / 0.0 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.007G104300 [exp] 0 / 1 AT5G20680 524 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037878 pacid=23163925 polypeptide=Lus10037878 locus=Lus10037878.g ID=Lus10037878.BGIv1.0 annot-version=v1.0 ATGCTTGAGTTGAGGGGACTGGTGCCGTTAGCCACGATGAAAGTAACACATTCTTATAACTGGAGGGGGGTTCACCTTTCGGTAGCTCTGCTTGCCATTT CTCTTACGGCGATTATTCTGTGGACATGGGAGGAGAATCCCTTAGTTACAACACTGCAGTCTGCGCAAGACCAGTTTAATGTATTCTCTTCAGGTATTAT TGTTAACAGGCCTAGCATTGCTTCCCAATCATCTGGGTATCCTCCTGATCATTTGGAGGAAGACCATGCAGGTTCATCGAGTGCAATTATGCTAAAGGAA GGTGGATTGCGGACAACAGGCGACCTCTATATTCTGGGTTTCAATGTAAACAATGGTTGTCTGGAATGTGGGCATGTCGAACATTTCCTCGAACAGATTT TTCATTCGAGGGATATAGATGGCAAGCAGAGAACTGTGAAATGA
AA sequence Show only first row Show all	>Lus10037878 pacid=23163925 polypeptide=Lus10037878 locus=Lus10037878.g ID=Lus10037878.BGIv1.0 annot-version=v1.0 MLELRGLVPLATMKVTHSYNWRGVHLSVALLAISLTAIILWTWEENPLVTTLQSAQDQFNVFSSGIIVNRPSIASQSSGYPPDHLEEDHAGSSSAIMLKE GGLRTTGDLYILGFNVNNGCLECGHVEHFLEQIFHSRDIDGKQRTVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037878 [exp]	0	1
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	1.4	0.9054
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	3.6	0.8413
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	4.2	0.8596
AT3G25130			unknown protein		Lus10011835 [exp]	8.7	0.8312
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	9.2	0.8647
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	9.8	0.8493
AT3G25130			unknown protein		Lus10022768 [exp]	10.2	0.8369
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	11.1	0.8554
AT5G11980			conserved oligomeric Golgi com...		Lus10024994 [exp]	11.2	0.8492
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015808 [exp]	13.3	0.8479

Compare expression of checked genes

Lus10037878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.