Plant FIBer expression Database

Lus10037880 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20130 113 / 3e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038580
[exp]
264 / 1e-90 AT5G20130 140 / 3e-42 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G013500
[exp]
143 / 4e-43 AT5G20130 147 / 9e-45 unknown protein
Potri.006G010600
[exp]
67 / 2e-14 AT5G20130 93 / 2e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10037880 pacid=23163763 polypeptide=Lus10037880 locus=Lus10037880.g ID=Lus10037880.BGIv1.0 annot-version=v1.0
ATGGCGCAGGTAGTTAACCTAAACCCTCTTCGTTCCTCGGCGGCTCCGAAGGAATCAAGCGACCTCTTCCGTCGCCGGTTCCCTCCAACCGGCATCAAAG
GCAGGAGGAGTTGCAGAAGCAGGATCAATTGCCTGTTCTCAAAAGGCGGAAGAGAGGAACAAGCGAAAAAGGCATTAGAGAGCGCGTTAGGAGGGAAGAA
GAGCGAGTTCGAGAAGTGGGGCAAGGAAATCAAGAAGAGAGAGGAAGCCAGGGGAGGGGATTCCAGTGGTGGTGCTGGAGGCGGCGGCGGTTGGTTCGGG
TCAGGCGGGCCATTCGGCGGAGGAGGCGAGAATTTGTGGCCGGAAGCTCAGCAAGCGTGTCTAACCTTATTAGGGATGGTAGGTATCTACCTGGTGCTTA
CCAAAGGGGAAGTCATGTTCGCGGTTGTCTGCAACCCTCTGCTCCGAACTCTAAGAGGAACCAGAGACGGGTTGACTTTCATTTCCTCCAAGTTCGCCGG
CGGCCATACTTATGTCGGTGATTCCTCCAGCAATGAAGCTTACGATGTGCGCGTCTCTGCCAAGGACAGAGTAGTGAAGAAATGGGGAACCGACTGA
AA sequence
>Lus10037880 pacid=23163763 polypeptide=Lus10037880 locus=Lus10037880.g ID=Lus10037880.BGIv1.0 annot-version=v1.0
MAQVVNLNPLRSSAAPKESSDLFRRRFPPTGIKGRRSCRSRINCLFSKGGREEQAKKALESALGGKKSEFEKWGKEIKKREEARGGDSSGGAGGGGGWFG
SGGPFGGGGENLWPEAQQACLTLLGMVGIYLVLTKGEVMFAVVCNPLLRTLRGTRDGLTFISSKFAGGHTYVGDSSSNEAYDVRVSAKDRVVKKWGTD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20130 unknown protein Lus10037880
[exp]
0 1
AT5G20130 unknown protein Lus10038580
[exp]
1.0 0.8357
AT5G05610 Alfin AL1 alfin-like 1 (.1.2) Lus10014843
[exp]
2.0 0.8332
AT5G55130 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-fact... Lus10000697
[exp]
2.4 0.8026
AT1G20580 Small nuclear ribonucleoprotei... Lus10030747
[exp]
6.0 0.7918
AT5G05610 Alfin AL1 alfin-like 1 (.1.2) Lus10009889
[exp]
8.7 0.7804
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Lus10013179
[exp]
8.8 0.7461
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Lus10008141
[exp]
10.6 0.7178
AT1G50300 TAF15 TBP-associated factor 15 (.1) Lus10012902
[exp]
12.3 0.7360
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10032560
[exp]
12.7 0.7677
AT1G28280 VQ motif-containing protein (.... Lus10025443
[exp]
13.2 0.6140

Lus10037880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.