Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54290 365 / 9e-125 CcdA cytochrome c biogenesis protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038581 [exp] 514 / 0 AT5G54290 381 / 6e-131 cytochrome c biogenesis protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406700 [exp] 404 / 3e-140 AT5G54290 433 / 1e-152 cytochrome c biogenesis protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF02683 [flax] [poplar] DsbD Cytochrome C biogenesis protein transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10037881 pacid=23163825 polypeptide=Lus10037881 locus=Lus10037881.g ID=Lus10037881.BGIv1.0 annot-version=v1.0 ATGAGCTTCCTCCTAACCCACTGTGTTAGTTGTTGTATTGCTGCCGATGACAAAATTAATCGAGTTGCCGTCAATGACCCCACTGAAGGAGGCAATTTGA TCTTTTTGACAGGGAAGAGAATCGCCGCGCTCAAAGTGAGTGGAGGTTCTTCCGCAGATGAGTGTGTTCGCTCTGAGGTTGTTTCTTTGTCGAAGAATTA CAGTAGTAGTAGCTTTCGTGACAAAGCCATTGCCAGTTCCCTTGCAGTTGCAAATTTGGTTGCAATAGGCAATGCCAGGGCTGTGTCCTCAGATAAATTA TTGGAAGATTCTGCCTTCCTTTATACTCTAGCTGAGGGAAATATTGGGGATTGGTTCGGAGGATTCATGTATTCTGCTGGTCAACAGGCTAATGAGGCAG TTCAGGGCCAATTAACAGCACTTAGCTTCACAAGTTTGGCTGTTATTTTTGGGGCAGGACTTGTAACTAGCCTTTCTCCTTGTACGCTGAGTGTTCTACC TCTGACCCTTGGTTACATTGGAGCATTTGGCTCAGGAAAAAGTAGAGCACAGATTGTGGGGGACTCTGTCGCATTCTCCTTAGGGTTGGCATCTACGCTT GCTCTTTTAGGCATAGCAGCCTCATTTGCTGGAAAAGCATATGGGCAGATAGGGCAAGGGTTGCCCTTAGCAGCTTCCGGATTGGCAATTGTTATGGGTC TCAATCTCCTGGAGGTTATTGAGGTACAGCTTCCTTCCTTTTTTGACAACTACGATCCTCGTGCTGCTGCTGCTAATTTTCCTTCAAGCGTACAAGCATA CCTAGCTGGGCTTACATTTGCATTGGCTGCATCACCTTGTAGTACACCAGTGCTGGCAACTTTGTTAGGATATGTAGCCACATCTAAGGATCCGATAGTC GGAGGCAGTCTACTTTTGACATACACAACTGGCTATGTCGCTCCTCTTCTTCTTGCTGCTTCTTTTGCTGGGGCATTGCAGGAGGGGGCGTGTACACCTT CTTGGATAGGCTGTTCCCGATTTCAATGGTTATGTAGAGGTGGCATCCTTAGTCTCAGGAAGCAGCAGCAGCAAGGTAATTATGTGAGAGGGAAAGTTGA TTCCTGCTTTACTTTCAGCTGCTTACTGGCAATCTCATCCTATGAGGCGGTTGTGGCGGATGATGCAACCGGTGGTGGTGCCTCCTCCACCGGGATGCTG TTGAATAGGCCAGAAGATGAGGAGGATGCGCCCATGTCATCATCGTGGAGAAGACTAGTAGTATGA
AA sequence Show only first row Show all	>Lus10037881 pacid=23163825 polypeptide=Lus10037881 locus=Lus10037881.g ID=Lus10037881.BGIv1.0 annot-version=v1.0 MSFLLTHCVSCCIAADDKINRVAVNDPTEGGNLIFLTGKRIAALKVSGGSSADECVRSEVVSLSKNYSSSSFRDKAIASSLAVANLVAIGNARAVSSDKL LEDSAFLYTLAEGNIGDWFGGFMYSAGQQANEAVQGQLTALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIVGDSVAFSLGLASTL ALLGIAASFAGKAYGQIGQGLPLAASGLAIVMGLNLLEVIEVQLPSFFDNYDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIV GGSLLLTYTTGYVAPLLLAASFAGALQEGACTPSWIGCSRFQWLCRGGILSLRKQQQQGNYVRGKVDSCFTFSCLLAISSYEAVVADDATGGGASSTGML LNRPEDEEDAPMSSSWRRLVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10037881 [exp]	0	1
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10009220 [exp]	1.7	0.9000
AT5G39790			5'-AMP-activated protein kinas...		Lus10028512 [exp]	5.1	0.9080
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	6.3	0.9136
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10025959 [exp]	8.4	0.8793
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10041097 [exp]	8.7	0.8487
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Lus10024288 [exp]	18.7	0.8316
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10041966 [exp]	19.3	0.8903
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	19.6	0.8890
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	21.4	0.8873
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030438 [exp]	22.8	0.8731

Compare expression of checked genes

Lus10037881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.