Plant FIBer expression Database

Lus10037882 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54310 285 / 3e-91 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1)
AT3G17660 87 / 2e-19 AGD15 ARF-GAP domain 15 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038582
[exp]
603 / 0 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1)
Lus10011238
[exp]
136 / 3e-35 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1)
Lus10018445
[exp]
133 / 4e-34 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1)
Lus10027249
[exp]
93 / 5e-21 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G127000
[exp]
416 / 9e-142 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.001G406300
[exp]
342 / 2e-112 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.011G044100
[exp]
228 / 4e-69 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.004G035800
[exp]
224 / 1e-67 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.012G036900
[exp]
108 / 6e-27 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1)
Potri.003G198301
[exp]
42 / 0.0007 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
Potri.T125706
[exp]
42 / 0.0007 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01412 ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence
>Lus10037882 pacid=23163649 polypeptide=Lus10037882 locus=Lus10037882.g ID=Lus10037882.BGIv1.0 annot-version=v1.0
ATGTCTTGCATACCCTGTTCTGTCTATGATGAAACCTGTGATTCAAGTGATACTACCCCTATGTATCTTCCATTTCGACTGTGCACCTCTAGTATTACTC
ACGTTCTTGATGTTATTCATATCATTCTCTCCCAGGCCAGAGTCATTATAGCTGTTCGATCTGCAACCCTTGATACATGGCTTCCAGAGCAGGTTGCATT
TATTCAATCTATGGGAAATGAGAAGGCAAATAGCTACTGGGAAGCTGAACTGCCCCCAAACTATGACAGAGTTGGAATCGAGAATTTTATTCGTGCAAAG
TATGACGATAAGAGGTGGATACCTAAGGATGGCAGCACAAAGTCTCCTCCCAGAGGGCATGCCGAAATCTCTTTGGAAAGGAAGAAGCCGGTGGAAAGAA
GTGGTCATGGGCACAGTAGCAGCTCCGAAAATTTATTCGAGGAAAGGAGGAGTGTACAGGCACAAAACTCAAAACCCCGAGTTCCTGCTGCAACAATAAG
TATTCCTCCTCCAAAAGGATCTGAGCAGATCACCCCTCCTAAGGTTGTCATGAAAGCTGAACCTGTCGTAGAGCCATCTGAATCAACAAAGAAGACTGTC
GATGCTGCTCCATCTGTCACTCAACCGAAGGTTGATTATGCTACTGACCTTTTCAACATGCTGTCATTTGATGGCCCAACTGAGAATGGCTCAGAGTTAG
CTGCTAATGATGATAATGGTTGGGCCGGTTTTCAAACTGCTGGTGTTGCGGGCTCTGGGGAAGCTTCAACAGTTGAGAAAGTTGATCCACCAAAAACAGT
AGAGAAGAATGATACACGTTCGACCACTGCCATCGAGGACTTATTTAAGGATGAACCTTCTACAATATCTTCTGCTGTCTCCCATAAACCAGAGAAAGAT
GTTAAAAATGACATAATGAGCCTTTTCGAGAAGTCCAATATGGTCTCTCCGTTTGCTATGCATCAACAACAAATTGCAATGCTAGCACAGCAACAATCAC
TTCTGATGGCTGCTGCAGCAAAAGCAGGTGATGGTTCTGTTTCTGCCAACGGTCAACAAGCCGGGGCCAATGGTTTTAATTTGCCAGCTCAGAATTGGCC
CAACGTTGGGTACCAGATTCCTGGTTTGATGGTGCCAGTGGCTGGGCAAGGCGACTTACATAAACTTATGCAGAGTGGTAACGTAACAGCAACACAACGA
ATGGGAGGCTCTGTACCGTATCCGGTATCATCTGGTACTGGGACGATATGCTCGAGTTCTGCTTCGGGAATGGTGGGTCCGAGGAGACAGACTGTGAAGG
AGGAGAACTCGGTTGTCGATATGTTGGAGCGGCGAGGGCTGACGATGCTGAGAGCGATGGATCTTGGCGGTGGCGTTTGA
AA sequence
>Lus10037882 pacid=23163649 polypeptide=Lus10037882 locus=Lus10037882.g ID=Lus10037882.BGIv1.0 annot-version=v1.0
MSCIPCSVYDETCDSSDTTPMYLPFRLCTSSITHVLDVIHIILSQARVIIAVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAK
YDDKRWIPKDGSTKSPPRGHAEISLERKKPVERSGHGHSSSSENLFEERRSVQAQNSKPRVPAATISIPPPKGSEQITPPKVVMKAEPVVEPSESTKKTV
DAAPSVTQPKVDYATDLFNMLSFDGPTENGSELAANDDNGWAGFQTAGVAGSGEASTVEKVDPPKTVEKNDTRSTTAIEDLFKDEPSTISSAVSHKPEKD
VKNDIMSLFEKSNMVSPFAMHQQQIAMLAQQQSLLMAAAAKAGDGSVSANGQQAGANGFNLPAQNWPNVGYQIPGLMVPVAGQGDLHKLMQSGNVTATQR
MGGSVPYPVSSGTGTICSSSASGMVGPRRQTVKEENSVVDMLERRGLTMLRAMDLGGGV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Lus10037882
[exp]
0 1
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Lus10038582
[exp]
1.0 0.9123
AT4G20380 LSD1 LESION SIMULATING DISEASE, LSD... Lus10023392
[exp]
6.8 0.8534
AT3G10220 EMB2804 EMBRYO DEFECTIVE 2804, tubulin... Lus10026266
[exp]
7.9 0.7795
AT1G27700 Syntaxin/t-SNARE family protei... Lus10007766
[exp]
10.0 0.8491
AT3G53030 SRPK4 ser/arg-rich protein kinase 4 ... Lus10005364
[exp]
13.0 0.8083
AT4G29010 AIM1 ABNORMAL INFLORESCENCE MERISTE... Lus10011102
[exp]
14.0 0.8204
AT2G21600 ATRER1B endoplasmatic reticulum retrie... Lus10041766
[exp]
15.2 0.8365
AT1G27700 Syntaxin/t-SNARE family protei... Lus10018703
[exp]
17.3 0.8100
AT1G71090 Auxin efflux carrier family pr... Lus10036001
[exp]
19.8 0.8515
AT5G67250 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/AS... Lus10011506
[exp]
20.8 0.7865

Lus10037882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.