Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20820 82 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038583 [exp] 144 / 5e-45 AT2G20820 75 / 1e-18 unknown protein Lus10031625 [exp] 99 / 6e-28 AT2G20820 102 / 1e-29 unknown protein Lus10033715 [exp] 99 / 7e-28 AT2G20820 104 / 9e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G109100 [exp] 110 / 2e-32 AT2G20820 97 / 9e-28 unknown protein Potri.013G146000 [exp] 101 / 8e-29 AT2G20820 76 / 3e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037883 pacid=23163712 polypeptide=Lus10037883 locus=Lus10037883.g ID=Lus10037883.BGIv1.0 annot-version=v1.0 ATGTCCGGACGCGCAGCAGCAACAGCGGCGGCCCGTCGAGTCGCTAATCTGATCCAAAGGAAACATCCTGCTCCTCCTCCTATTCATTCTTCTCCCCTCC TCCAACGCCGTGGCATGGCCGGAGGCCCCGATCATCATGGACCCCCAAAGGTGAATTTTTGGGAGGACCCTTTCAGCCCCTCTAAGTGGAAAGAAGAGCA TTTTGTTATCGTCTCTATGACTGGCTGGGGGCTACTCATCTATGGAGGTTACAAGTATTTCGCACAAGGCGACACACATAACAACAAGGAGGAGGTAAAC ATTTATATATCGTTGCCGTATGTTATACCAGTCAGTTCATCCCGTACTCCAGTTTATGTGCATGTTATCTTGACCATCGAATCAGTACTTAACCACTTCT AA
AA sequence Show only first row Show all	>Lus10037883 pacid=23163712 polypeptide=Lus10037883 locus=Lus10037883.g ID=Lus10037883.BGIv1.0 annot-version=v1.0 MSGRAAATAAARRVANLIQRKHPAPPPIHSSPLLQRRGMAGGPDHHGPPKVNFWEDPFSPSKWKEEHFVIVSMTGWGLLIYGGYKYFAQGDTHNNKEEVN IYISLPYVIPVSSSRTPVYVHVILTIESVLNHF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20820			unknown protein		Lus10037883 [exp]	0	1
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	7.7	0.8434
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	10.7	0.8940
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	12.9	0.8754
					Lus10011947 [exp]	15.1	0.8421
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	24.9	0.8552
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	26.6	0.8622
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	30.4	0.8625
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003052 [exp]	31.1	0.8062
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10026172 [exp]	37.1	0.8464
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10031046 [exp]	37.3	0.8481

Compare expression of checked genes

Lus10037883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.