Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54380 1162 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 760 / 0 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 745 / 0 Malectin/receptor-like protein kinase family protein (.1) AT3G46290 735 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 728 / 0 Protein kinase superfamily protein (.1) AT5G61350 728 / 0 Protein kinase superfamily protein (.1) AT1G30570 647 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G24010 617 / 0 Protein kinase superfamily protein (.1) AT3G51550 606 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 580 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042844 [exp] 780 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 778 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10017478 [exp] 725 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 718 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 713 / 0 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10021632 [exp] 706 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 689 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10014185 [exp] 622 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10027509 [exp] 619 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G405500 [exp] 1284 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 1268 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 813 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 796 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.015G061700 [exp] 770 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 758 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 737 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.017G143049 [exp] 642 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.010G213200 [exp] 641 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.016G138700 [exp] 632 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037887 pacid=23163776 polypeptide=Lus10037887 locus=Lus10037887.g ID=Lus10037887.BGIv1.0 annot-version=v1.0 ATGGGGGCACTAGGATTTGTGTTGCCGAGAATAGTGAAGATGAGGAAGCTAGAAAGATCCTTTTCGATGCTTGTTATTGTTGTTTTGTTGGAGTTCATTG GTCAAGATGGAGCCCTTGCTTCCTATACTCCTCCTGATAACTATTTGATTGCCTGTGGTTCTACCAAAGATGTCACTTTTCAAGGTAGAACTTTTGTTCC TGATGCTGGCCATTCCTCTCTTACATTAAAGACTGGAACTTCCACTGTTGCTACCTCCAACTCTACTTCCCCACCATCTCCTTTCTACCAGTCGGCCCGC ATCTTCTCTGGCATAGCTACTTACAATTTCGATATCCAGCAACAGGGTCGTCATTGGATCCGCCTTTACTTTTACCCCATTCCAACCTCTACTCAAAACT TGACTTCTGCATCCATTAGTGTTGTCACTAAAGATTTTGTGCTCTTGCACAATTTCACATTCAAGAACTACAACGGTACCTCCATGTTTAAGGAGTATGC AGTCAATGTTACTTCTGATAGTTTGTCCCTTTCTTTCATTCCTTCAAATGATTCTGTGGCCTTTGTGAATGCTATTGAAGTTGTTTCTATACCTGATATA GTTCTCCCTGATCAAGCATGGGCTCTAAATCCATCCAACACTGTTAGTGGTCTTTCTGATCTTGCCTATGAGACTGTTTACCGGTTAAACATGGGCGGTC CTCTAATCACATCTGAAAATGATACTCTTGGAAGAGTTTGGGAGAATGATGCTGAGTATCGTCATGTGAATAACTCTGCTGTGGACGTTTCAACCAACCC TTCATCCATAAGGTATCCAGCTTCTCTTACACCTGAAACTGCTCCACAAGAAACGGCTCCGAATTTGGTTTATGCCACTGCTGTAGCCATGGGGGATCCA AATGTGGCCATCGTCAACTTCAACATGACTTGGGTTCTTCCTGTCAATCCAAACTTCAGATACTTAGTTCGGCTGCATTTCTGTGATATCATCAGCAGGG CTATGAACAATCTTGTGTTCGACGTTTATGTGAATGACGATAGTGCTCTCCAGAGTCTTGATCTCTCATCTATTACTGGTGGTCTCACTGTACCATATTA CCGTGACTTCATCTCCAACTCGTCCACAGAAGAATCAGATACATTGATGGTCAGTGTTGGTCCAGATACAATGGCAGACGTCACCAATGCCACCATTAAT GGGCTGGAGATATTGAAAGTCAGCAATGATGCTAAGAGCTTGGATGGGGTAACTTCTGTGAAGAGTCTCATTCCAGGGTCGTCTTCAAAGGCTAGCAAGA TAGGAATTGTGATTGGTTCAAGTGTTGGCTCTGTAGCTGCAATTGCTTTACTTGGTTTGTGTTACTGCTGTGTTGCATCTCGCAGGAGCAAAGCCCCTCA GCAGGGACATTCATGGCTGCCTTTGCCTTTGTATGGAAATTCGCAAACCATGACAAAGATGTCGACAACGTCGCAAAAGAGTGCTACAGCTAGCTGCATC TCATTAGCATCATCTAACCTCGGCCGTTTCTTCCCGTTTCAAGAAATCCTTGACGCGACCAACAAGTTTGATGAAGGTCTTTTGCTTGGTGTTGGTGGTT TTGGCAGGGTTTACAAAGGAACCCTTGAAGATGGGACTATGTTGGCAGTTAAGAGAGGAAATCCCAGGTCAGAACAGGGTCTTGCTGAATTCAGAACTGA GATTGAGATGTTATCCAAGCTAAGGCATCGCCACCTTGTATCTCTCGTGGGATATTGTGATGAACGGTCAGAGATGATTCTTGTTTATGAATACATGGCT AATGGACCTCTCAGAAGCCATTTGTATGGAACAAACTTGCCATCACTCTCTTGGAAGCAACGACTTGAAATCTGCATTGGAGCTGCAAGGGGTCTTCATT ATCTCCATACTGGTGCAGCACAAAGCATCATTCACAGAGATGTGAAAACAACAAATATACTCCTGGATGAGAATTTGGTTGCCAAAGTTGCTGACTTTGG TCTGTCAAAAGCTGGACCGTCGCTTGATCAGACCCATGTCAGTACTGCCGTAAAAGGTAGTTTTGGTTATCTCGATCCTGAATACTTCAGAAGGCAACAG CTTACGGAGAAATCAGATGTGTACTCGTTTGGAGTAGTGCTAATGGAAGTTCTTTGCACAAGACCAGCTCTAAATCCTGTTCTTCCGAGGGAGCAGGTGA ATATAGCAGAGTGGGCAATGGCTTGGCAAAAGAAAGGGATGCTGGACCAAATCATGGACCAGAATCTGGTTGGGAAAGTGAATCCTGCTTCTCTGAAGAA GTATGGGGAGACAGCTGAGAAGTGCCTTGCTGAGCATGGTGTTGACAGGCCATCAATGGGAGATGTTTTATGGAACCTTGAGTACGCACTGCAGCTTCAG GAGACATCATCTGCGCTAATGGAACCTGAAGATAACAGCACAAACCACATTCCGGGCCTACCATTGACACCTCTCGAACAGTTTGATAACAGCGTAAGCA TGATAGATGCAGGGCACTCCGGCACAGATGACGATGCTGAAGATGCCACAACAAGTGCAGTATTCTCACAACTAGTCAATCCTCGTGGAAGATGA
AA sequence Show only first row Show all	>Lus10037887 pacid=23163776 polypeptide=Lus10037887 locus=Lus10037887.g ID=Lus10037887.BGIv1.0 annot-version=v1.0 MGALGFVLPRIVKMRKLERSFSMLVIVVLLEFIGQDGALASYTPPDNYLIACGSTKDVTFQGRTFVPDAGHSSLTLKTGTSTVATSNSTSPPSPFYQSAR IFSGIATYNFDIQQQGRHWIRLYFYPIPTSTQNLTSASISVVTKDFVLLHNFTFKNYNGTSMFKEYAVNVTSDSLSLSFIPSNDSVAFVNAIEVVSIPDI VLPDQAWALNPSNTVSGLSDLAYETVYRLNMGGPLITSENDTLGRVWENDAEYRHVNNSAVDVSTNPSSIRYPASLTPETAPQETAPNLVYATAVAMGDP NVAIVNFNMTWVLPVNPNFRYLVRLHFCDIISRAMNNLVFDVYVNDDSALQSLDLSSITGGLTVPYYRDFISNSSTEESDTLMVSVGPDTMADVTNATIN GLEILKVSNDAKSLDGVTSVKSLIPGSSSKASKIGIVIGSSVGSVAAIALLGLCYCCVASRRSKAPQQGHSWLPLPLYGNSQTMTKMSTTSQKSATASCI SLASSNLGRFFPFQEILDATNKFDEGLLLGVGGFGRVYKGTLEDGTMLAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLVGYCDERSEMILVYEYMA NGPLRSHLYGTNLPSLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENLVAKVADFGLSKAGPSLDQTHVSTAVKGSFGYLDPEYFRRQQ LTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMAWQKKGMLDQIMDQNLVGKVNPASLKKYGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQ ETSSALMEPEDNSTNHIPGLPLTPLEQFDNSVSMIDAGHSGTDDDAEDATTSAVFSQLVNPRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	0	1
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	1.0	0.9203
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	1.4	0.8713
					Lus10006920 [exp]	2.8	0.8062
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	5.5	0.8643
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	6.3	0.8390
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	9.4	0.7993
AT1G53400			Ubiquitin domain-containing pr...		Lus10029264 [exp]	10.5	0.8344
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10011645 [exp]	18.5	0.7569
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	19.0	0.8051
AT5G38700			unknown protein		Lus10010019 [exp]	20.7	0.7483

Compare expression of checked genes

Lus10037887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.