Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54390 465 / 2e-164 ATAHL, AHL HAL2-like (.1) AT5G63980 251 / 4e-80 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G09290 228 / 5e-72 Inositol monophosphatase family protein (.1) AT5G63990 227 / 3e-71 Inositol monophosphatase family protein (.1.2) AT5G64000 206 / 4e-63 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT4G05090 102 / 4e-24 Inositol monophosphatase family protein (.1) AT4G39120 41 / 0.001 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038597 [exp] 700 / 0 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10011231 [exp] 470 / 4e-165 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10018453 [exp] 468 / 2e-164 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10015663 [exp] 211 / 1e-64 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 194 / 2e-59 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10007817 [exp] 102 / 6e-24 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10006739 [exp] 98 / 2e-22 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124700 [exp] 555 / 0 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.011G044900 [exp] 530 / 0 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 520 / 0 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.007G105100 [exp] 241 / 3e-76 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 240 / 5e-76 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.004G033200 [exp] 110 / 6e-27 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.009G120600 [exp] 41 / 0.001 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10037888 pacid=23163701 polypeptide=Lus10037888 locus=Lus10037888.g ID=Lus10037888.BGIv1.0 annot-version=v1.0 ATGGGAGATGCAAATTACGCCGGAGAATTGGATATAGCCGTTCGCGCTGTTCATATGGCTTGCGCTCTTTGTCAGATAGTCCAGGAAGGGTTAGTTTCTC ATGGCACCGGACAAGTTAAGTCTAAAGATGACGATTCTCTTGTTACTGTTGCAGATTGGAGTGTTCAAGCAACAGTGAGTTGGATTCTGGCCGAATCATT TGGGGATCAAGATGTCTCCATAGTTGCTGAAGAAGATGTTCAAACTCTGTCAAAGGCTGAATTAGCAGATTTGCTGGCAGCCGTCACAAAAACTGTTAAT GAAAGCTTAGCAGAGGCACCAAAATATGGTCTCCAAAGTCCCAAGAAGGCCCTTGGAGCCTCGCAAGTTCTTGAGGCTATCAGCAGATGCAACTCAACAG GGGGGACTACTGGCAGACATTGGGTGCTTGACCCTGTTGATGGAACATTGGGATTTGTTCGAGGGGATCAATATGCTGTAGCTTTAGCTCTGATTGAGGA TGGGAAAGTTATTTTGGGAGTTCTTGGCTGTCCTAATTACCCTATGAAGAATGGGTGGTTGAGTCATCATCATCATAAGTTTGATGAACGCATCTCTGAG TCATCCTCCACAGCTACTGAAACTTGGGAGAAAGGGTGTGTTATTTATTCACAGAAAGGCAGCCGCAAAGCGTGGATGCAGCCATTAATACACAAGAACA AGATACTCGAATGGCCAAATTCTGCACGGCAGATTTATGTTTCATCAATCGACGATCCAGGACAAGCAACCTTTTGTGAACCAGTCGAGAAGGCTAATTC AAACCACTCCTTCACAGCTGGAGTTGCATATACCATGGGGTTCAAAAAACAGCCCCTACGTGTGCATAGCATGGTAAAATATGCTGCCATTGCAAGAGGA GACGCTGAAATTTTCATGAAATTTGCACGATCTGGGTACAAAGAGAAGATATGGGATCACGCTGCAGGTGTTGTAATTGTCGAGGAGGCTGGTGGTGTAG TAACTGATGCTGGAGGACGTCCCCTTGACTTCTCAAGAGGAATTTACTTAGAGGGCCTTGACCGAGGGATAGTCGCTTGCTGTAGGGCCAAATTGCGTGA AAGATTCATTGAAGCTGTGTATGCTAGTTGGGATTCTTCTAATCTTTGA
AA sequence Show only first row Show all	>Lus10037888 pacid=23163701 polypeptide=Lus10037888 locus=Lus10037888.g ID=Lus10037888.BGIv1.0 annot-version=v1.0 MGDANYAGELDIAVRAVHMACALCQIVQEGLVSHGTGQVKSKDDDSLVTVADWSVQATVSWILAESFGDQDVSIVAEEDVQTLSKAELADLLAAVTKTVN ESLAEAPKYGLQSPKKALGASQVLEAISRCNSTGGTTGRHWVLDPVDGTLGFVRGDQYAVALALIEDGKVILGVLGCPNYPMKNGWLSHHHHKFDERISE SSSTATETWEKGCVIYSQKGSRKAWMQPLIHKNKILEWPNSARQIYVSSIDDPGQATFCEPVEKANSNHSFTAGVAYTMGFKKQPLRVHSMVKYAAIARG DAEIFMKFARSGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSRGIYLEGLDRGIVACCRAKLRERFIEAVYASWDSSNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	0	1
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	1.4	0.9527
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	3.0	0.9275
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	3.7	0.9310
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	5.5	0.9162
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	5.7	0.9204
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	6.9	0.9025
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	8.8	0.9033
AT3G01810			unknown protein		Lus10015805 [exp]	9.5	0.9146
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	11.7	0.8962
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	12.2	0.9039

Compare expression of checked genes

Lus10037888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.