Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 248 / 1e-76 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 246 / 9e-76 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 243 / 9e-75 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 232 / 4e-74 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 230 / 4e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 228 / 4e-69 EFR EF-TU receptor (.1) AT2G24130 147 / 8e-41 Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 130 / 7e-35 Protein kinase family protein with leucine-rich repeat domain (.1) AT2G19230 127 / 1e-33 Leucine-rich repeat transmembrane protein kinase protein (.1) AT5G44700 126 / 2e-33 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038598 [exp] 286 / 1e-91 AT3G47570 671 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 289 / 3e-90 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 278 / 1e-87 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 271 / 3e-85 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 270 / 1e-84 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 269 / 2e-84 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030636 [exp] 269 / 2e-84 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030851 [exp] 268 / 3e-84 AT3G47570 748 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 268 / 3e-84 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033900 [exp] 274 / 1e-86 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 271 / 2e-85 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G100901 [exp] 260 / 5e-85 AT5G39390 394 / 9e-133 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 271 / 6e-85 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 270 / 7e-85 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 269 / 3e-84 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 268 / 6e-84 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 266 / 2e-83 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 265 / 8e-83 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 263 / 2e-82 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037889 pacid=23163660 polypeptide=Lus10037889 locus=Lus10037889.g ID=Lus10037889.BGIv1.0 annot-version=v1.0 ATGAGAAGTTTTGGTTCTGAGTACAAGGCGGTCATTGGAGAAAGCGGGACAACCATTGCTGTAAAGGTGTTCAACCTTGAGCGCCAAGGAGCTTCTAAGA GTTTCATAGCAGAATGTGAAGCCTTAAGGAATATTAGACACAGAAACCTGATGAAGATAGTAACTGTTTGCTTGAGTGTTGATTACCATGGGAATGATTT CAAAGCTGCTATTTATGAATATTTTGCTAATGGTCGGTTGGAAGAGTGGCTTCATCCAGAGGAGAGTAGCAATTCTTGTGACTTCCCTAGGAGACTGACT TTTCTCCAGAGACTAAATGTTTCCATTGATGTAGCTTCAGCACTGGATTACCTTCATCACCAATGCCAAGTACCCTTAGCTCATTCTGATCTGAAGCCAA GTAATATCCTTATCGACAACACCATGACAGCAGACATTGGTGATTTTGTGTTGGCAAGATTCCTGACATCAGTTTCAGAACCCTCTTCTGCAGAGCAGAC AAGCTGTATTGGGTTGAAAGGAACTATTGGCTATGCTCCTCCTGAATATGGTACGGGAAATGAAGTGTCCATCCAAGGCGATGTATACAGCTATGGCATC CTCCTACTTGAGAGTTGA
AA sequence Show only first row Show all	>Lus10037889 pacid=23163660 polypeptide=Lus10037889 locus=Lus10037889.g ID=Lus10037889.BGIv1.0 annot-version=v1.0 MRSFGSEYKAVIGESGTTIAVKVFNLERQGASKSFIAECEALRNIRHRNLMKIVTVCLSVDYHGNDFKAAIYEYFANGRLEEWLHPEESSNSCDFPRRLT FLQRLNVSIDVASALDYLHHQCQVPLAHSDLKPSNILIDNTMTADIGDFVLARFLTSVSEPSSAEQTSCIGLKGTIGYAPPEYGTGNEVSIQGDVYSYGI LLLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10037889 [exp]	0	1
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031319 [exp]	7.7	0.8261
					Lus10005604 [exp]	8.7	0.7960
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	13.2	0.7646
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10021156 [exp]	16.1	0.7140
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	36.7	0.7600
					Lus10040057 [exp]	40.1	0.7010
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	42.0	0.7138
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031687 [exp]	45.7	0.7243
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	54.8	0.7398
					Lus10003428 [exp]	71.0	0.7312

Compare expression of checked genes

Lus10037889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.