Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54400 351 / 9e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G15530 317 / 2e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23360 55 / 1e-08 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038599 [exp] 451 / 1e-160 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029124 [exp] 61 / 2e-10 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10013038 [exp] 58 / 2e-09 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G405200 [exp] 370 / 4e-129 AT5G54400 396 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G128300 [exp] 368 / 4e-128 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 58 / 2e-09 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.006G150500 [exp] 42 / 0.0003 AT4G29590 415 / 9e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G245800 [exp] 41 / 0.0006 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 41 / 0.0009 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10037890 pacid=23163675 polypeptide=Lus10037890 locus=Lus10037890.g ID=Lus10037890.BGIv1.0 annot-version=v1.0 ATGGGGAAATCAAGCCCTCCAAACCGTGACTGGACGCAGATCTACGCCATCTACGGCATGGATCAGTGGCACACTCTACTGTTCCTCTTGTTCCACGCCC TCCTCTTCTCAATTCTCTCCCTCCTCTTCCTCTTCTACTTCGACCCTTTCTGCAATTTCCTCCAATCGGCGTTCCCTCTTCTCTTCGCCGGAAGCGGGGC GGCAAGGTTTGCCGCTGGGTTCACAGGCTGCGTTGCGGCGCTCTCCGCCTTGTGCCTCTTCTTCGCCGCCGGCAACTTCTTCTACAGCTCCGTCGCCTTG CAGCACGAGATGGCCCAGAGGATCGTCGGCCATGTGAATGACTGGTCGTCGGTCAAATTAGCACTCGACATCGGGTGCGGCCGTGGGATTCTGCTGAATT CGGTCGCGACCCAGTTGAAGAAAACCGGTAGCTCCGGCCGGGTTGTCGGGTTGGACCGGTCTAAACGGACCACACTCTCCACGCTCCGTACCGCAAACAT GGAAGGCGTGGGGGAGTACGTGACTTGCAGGGAAGGAGATGTTCGGAGCTTGCCGTTCGGAGACAACTACTTCGACGTGGTGGTGTCGGCGGTTTTCTTC CACACGGTGGGGAAGGAGTACGGACACCGGACGGTGGAAGCGGCGGCGGAGAGGATGCGGGTGTTGGGGGAGATGGTTCGGGTACTGAAACCCGGTGGGG TGGGTGTTGTGTGGGACCTGGTCCATGTGCCTGAGTACGTGAGGAGGCTTCAGGAGCTGAAGATGGAGGAAATCCGGGTGTCGGAGCGGGTCACGGCGTT CATGGTGAGCAGTCACATTCTGTCGTTCCGGAAGCCCAACCAGCTGCAGCTTTCGATGACCGGTGGTATGGATGAGAGTTTTACTGCAAGAGGTAAAGAG GGTCTAAGTTTCTATGCTGCTGCTGCACAATCTGGGATCTAG
AA sequence Show only first row Show all	>Lus10037890 pacid=23163675 polypeptide=Lus10037890 locus=Lus10037890.g ID=Lus10037890.BGIv1.0 annot-version=v1.0 MGKSSPPNRDWTQIYAIYGMDQWHTLLFLLFHALLFSILSLLFLFYFDPFCNFLQSAFPLLFAGSGAARFAAGFTGCVAALSALCLFFAAGNFFYSSVAL QHEMAQRIVGHVNDWSSVKLALDIGCGRGILLNSVATQLKKTGSSGRVVGLDRSKRTTLSTLRTANMEGVGEYVTCREGDVRSLPFGDNYFDVVVSAVFF HTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLVHVPEYVRRLQELKMEEIRVSERVTAFMVSSHILSFRKPNQLQLSMTGGMDESFTARGKE GLSFYAAAAQSGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	0	1
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	1.7	0.7987
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	4.5	0.7863
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10042221 [exp]	9.2	0.7051
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	11.1	0.7685
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	12.2	0.7630
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	16.7	0.7211
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	16.9	0.7162
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	17.8	0.7212
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	18.5	0.7197
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10002938 [exp]	23.1	0.6651

Compare expression of checked genes

Lus10037890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.