Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 107 / 1e-25 F-box and associated interaction domains-containing protein (.1) AT3G06240 107 / 1e-25 F-box family protein (.1) AT4G12560 88 / 7e-19 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 84 / 6e-18 F-box and associated interaction domains-containing protein (.1) AT4G22390 75 / 1e-14 F-box associated ubiquitination effector family protein (.1) AT3G16210 74 / 2e-14 F-box family protein (.1) AT5G65850 71 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT2G04920 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) AT3G23260 69 / 7e-13 F-box and associated interaction domains-containing protein (.1) AT3G17480 68 / 2e-12 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038606 [exp] 718 / 0 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10029856 [exp] 173 / 9e-54 ND 40 / 6e-05 Lus10038603 [exp] 162 / 9e-46 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10013873 [exp] 148 / 6e-41 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10026587 [exp] 148 / 1e-40 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10004795 [exp] 138 / 2e-40 ND / Lus10013872 [exp] 122 / 5e-31 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10001105 [exp] 107 / 1e-25 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10012355 [exp] 105 / 3e-25 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121200 [exp] 235 / 4e-74 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G262900 [exp] 174 / 5e-51 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 150 / 8e-42 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 143 / 3e-39 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G006800 [exp] 139 / 1e-37 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 138 / 1e-36 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 127 / 3e-33 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 126 / 2e-32 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 125 / 3e-32 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 120 / 2e-30 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10037892 pacid=23163639 polypeptide=Lus10037892 locus=Lus10037892.g ID=Lus10037892.BGIv1.0 annot-version=v1.0 ATGACAGCAGACTATCTCCCACAGGAAATCCTAGTGGACATCTTCCACAGGCTCCCAATCAAATCCATAGGTTCCTGCATCTGCGTCTCCAAGTACTGGC TATCCATCATCAAAACCCCCGATTTCGTCGCCGACAATTTCAACATCCAACAGACAAGCCCACGACGTCATCATCCCCTGTTCCTCGTCCGGCTCTGTTC CGGCCCTGCTCTCAACATCCAATACTCTCTTCGCTACGACGACGACTATTACTTCACCCGCTACTCCAAAGTCAGACCCCCTTTCGAATTCAACAACCAC TCCTTCTCCATCGTCGGCTCCTGCCGCGGCTTGGTCTGCCTCATGCACAATCTCTACACCTACGACTACACCGTCGCTCTCTGGAACCCGTCCATCGGCA AGACCTTCAATCTCCCTTTACCAGGCGTCACTTTCGACACCCACGGCGCTTTCGAAGCTCTTCTAGGGTTCGGGTTCGATTCCTTCGCCCAGGATTACAA AGTGGTGAGAGTCTTGCGGCTCCTCGAGAGAGACGATGTCGAAATCGAAGTCGAAGTTTTCTCCTTCAACGCCCGATCCTGGAAGAGGGTTATTACTCCC AGACCGCCGCAGTACAGCATCGTGGAGCGTGGGTCTCAGGCTTTCGTCAACGGGTCGGTCCACTGGGTCGCGACGACCGGGGGGAACGATAGCGGCGGCA GAGATAAGAGCTTGATCGTCGGGTTCCGATTGGGAGACGAGCGATTCAGGGAGCTGGAGCTGCCGGAGACCTTGGAAATGGAGAGTCCAATTTTCTTGAC GTTGAGCCCGTACAAGGAATCGACGATTGCGGTGTTTAGGAGGAACTACTTGACCCGATCGGATAATGAGATATGGGTGATGTCGGAGTACGGGCGGGTG GGTTCGTGGGTGAGATTGTTGACCGTGGGGATGTACGGGGACGGGGTGCCGAGGGCGCTGGGATTCAGAGGAAACGGCGAGGTTTTGTTTGAACTTTCGG GTGGGGAGATAGTGTCGGGTGACCCAGAGAGTTTCGAGGTTCGAGAACTGGGATTGCGGGGAGAAGTTGGGTATTCTGTTCTGAGCAGCTTCCAGGAGAC CCTAGCTTTGCTTGATACATCCAGTGCCTGTTGCGACTATATTTAG
AA sequence Show only first row Show all	>Lus10037892 pacid=23163639 polypeptide=Lus10037892 locus=Lus10037892.g ID=Lus10037892.BGIv1.0 annot-version=v1.0 MTADYLPQEILVDIFHRLPIKSIGSCICVSKYWLSIIKTPDFVADNFNIQQTSPRRHHPLFLVRLCSGPALNIQYSLRYDDDYYFTRYSKVRPPFEFNNH SFSIVGSCRGLVCLMHNLYTYDYTVALWNPSIGKTFNLPLPGVTFDTHGAFEALLGFGFDSFAQDYKVVRVLRLLERDDVEIEVEVFSFNARSWKRVITP RPPQYSIVERGSQAFVNGSVHWVATTGGNDSGGRDKSLIVGFRLGDERFRELELPETLEMESPIFLTLSPYKESTIAVFRRNYLTRSDNEIWVMSEYGRV GSWVRLLTVGMYGDGVPRALGFRGNGEVLFELSGGEIVSGDPESFEVRELGLRGEVGYSVLSSFQETLALLDTSSACCDYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	0	1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	4.7	0.8693
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	6.0	0.8619
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	6.7	0.8576
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	7.0	0.8284
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	7.7	0.8345
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10042655 [exp]	10.0	0.7911
AT4G29850			Eukaryotic protein of unknown ...		Lus10019737 [exp]	10.6	0.8271
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	11.7	0.8539
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Lus10036368 [exp]	12.4	0.8138
AT1G57680			unknown protein		Lus10008842 [exp]	15.9	0.7903

Compare expression of checked genes

Lus10037892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.