Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10340 219 / 2e-63 Ankyrin repeat family protein (.1.2) AT1G34050 186 / 3e-51 Ankyrin repeat family protein (.1) AT5G54710 176 / 3e-47 Ankyrin repeat family protein (.1) AT5G02620 128 / 3e-31 ATANK1, ANK1 ankyrin-like1 (.1) AT2G24600 125 / 3e-30 Ankyrin repeat family protein (.1.2.3.4) AT3G12360 123 / 2e-29 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G03670 117 / 3e-27 ankyrin repeat family protein (.1) AT3G09550 116 / 5e-27 Ankyrin repeat family protein (.1) AT2G31820 115 / 9e-27 Ankyrin repeat family protein (.1) AT1G07710 111 / 1e-25 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038609 [exp] 575 / 0 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10038608 [exp] 449 / 4e-155 AT1G10340 168 / 2e-47 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 229 / 4e-66 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10018757 [exp] 154 / 2e-39 AT1G34050 298 / 3e-93 Ankyrin repeat family protein (.1) Lus10041537 [exp] 144 / 3e-37 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10008329 [exp] 127 / 2e-30 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 120 / 3e-28 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 119 / 5e-28 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 117 / 2e-27 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042200 [exp] 580 / 0 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.001G187600 [exp] 226 / 4e-65 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 158 / 5e-42 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 154 / 7e-41 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 152 / 5e-40 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.012G113800 [exp] 148 / 1e-38 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 135 / 4e-34 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.011G133300 [exp] 135 / 3e-33 AT1G03670 250 / 6e-75 ankyrin repeat family protein (.1) Potri.011G133700 [exp] 131 / 3e-33 AT1G03670 185 / 8e-53 ankyrin repeat family protein (.1) Potri.006G223700 [exp] 132 / 6e-33 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10037894 pacid=23163898 polypeptide=Lus10037894 locus=Lus10037894.g ID=Lus10037894.BGIv1.0 annot-version=v1.0 ATGGAGATCAGTCGGCAGGGGGTGCTGTATGAAACCGTGGTGAGGGGGGACGTGGCGGCCTTTGTGGCCCTGGTGGAGGAGCAGGAGGAGAATATTGTGG AAGTGTTGATAACGAAGCAGCTGGTGCTGCACCTGGCGGCTCGGCTGGGGCACGTGGAGCTGGTGAAGGAGTTGGTGAAGCGGGTACCGAGTGGGGTGTC GGCGTTGAACGAGAAGAAGGAGACTCCGTTGCATGAGGCATGCAGGGAAGGGTGGGCTGACGTGGCGAGGTTGATGGTGGAGATGGATCCTTGGGTTGTG TGTAAGCTCAACGAGGGCAGGGAGAGTGCGCTGTTGGTGGCGGCCAGGAGAGGGAAGTTGGAGGTGGTGAGTTTTCTGTTGTCGGAGTCGCAGTGGATTT TGTTGATGATGGAGGTTGACGCTCCCACCACTTCTCTTCACGCCGCTGCTTCCGGTGGTCATACTGAGATTGTGAAGGAGATATTGAAAGTACGTCCGGA CTTCGCATGGAAACGGGAAAGTAGTAGACAAGGATGTACCGCTCTCCACCAAGCTTGTACCAAAGGCCATCTCAACGTAGCCAGGGAGCTCCTCAAGCTG GACGCCGACCTGGCTTCCGTCCAAGACAACGACGGCCGGACTCCGCTCCATTACGCTGCTATGAAAGGTCGGGTCAACATCATCGACGAGATACTCTGCT ACAGTCTGGACTCTGCCCACACCATCACCACACGTGGCGAGACCGTGCTTCATATGAGCGTCAAGAACAACCAATTCGAAGCTGTCAAGTACCTTGTCGA GAAACTCAATACTGCCATGCTCCTCAACAGACCTGATCACGACGGCAATACCATTTTGCATCTCGCCACCGCCGGAAAGCTTAGCACTATGGTGATCTAC CTCCTGAAGGTAGGCATAGAAGTGAACGCAATCAATCAAAAGGGCCAAACTGCGCTAGACGTGGTGGAGTCCGACTCCAGCAATTCCGGCCCACTTCTCA TATTACCAGCACTACTTGACGCCGGCGCCAAGAAGTGCTCCCAGCTGCCACCAACCTCCTCCGGGGAGATCCTTCACCACCACCAGGAAATGTTATTTAT GAACAGCCCGTCCATACGTTCCACATTGCTTTCACCTCCACCAAGCAAACTAGTTTCCAAATCTCCGCGTCATCATCACGATAGCCACCACCGTCCTCAT GGTAGTAGCCATCGCAGACGCAGGGAGAAACAACTGGCGATCCAAAACGAGGGCCTTCGCAACGCTCGAAACACCATTGCGGTGGTGGCCGTTCTTATAG CCACGGTGACGTTTGCAGCTGGCATAAACCCGCCGGGGGGTTTGAACCAGCAGAGCGGGAAGGCAATCTTGGGACACAAGGCTTCTTTCAAGGTGTTTAT GGTGTGCAACATTCTTGCTCTGTTTCTGTCTCTAGGGGTGGTCATAGTTTTGGTAAGCATCATACCTTTCCGTAGGAAGCCAATGATGACGATCCTGGCA TTGGCACACAAAGTGATGTGGGTTTCGGCGTTGTTCATGGCGGCCGCCTACTTGGCGGCGGTGTGGACGGTTTTGCCCCACCATGAGGCGGAGTGGGTGG TTGCAATCGGTGGAGGATCCACAGCTTTGATATTTGTTGGGTTGAGTGTTTTGCTTGTGAAGCATTGGATGAGGAAGCGAGAATACTATTGGATGAGGAG GAAAAATGATGAGATTATGATGGCGAAGAAGAGGGGAAATGGAAATCTTCATCATAATATGAGCAGCAGCCCGAATGGAAGCGGAGTTAGTGGACTTGAA GAGTTGAAGGCTATGAAGAAAAGTGGACGTTACTCTAGCAGTAGTAATTCTGATGTTGGTAGCTCTGAAAAGGAAGGTTATCACCTGTACTAG
AA sequence Show only first row Show all	>Lus10037894 pacid=23163898 polypeptide=Lus10037894 locus=Lus10037894.g ID=Lus10037894.BGIv1.0 annot-version=v1.0 MEISRQGVLYETVVRGDVAAFVALVEEQEENIVEVLITKQLVLHLAARLGHVELVKELVKRVPSGVSALNEKKETPLHEACREGWADVARLMVEMDPWVV CKLNEGRESALLVAARRGKLEVVSFLLSESQWILLMMEVDAPTTSLHAAASGGHTEIVKEILKVRPDFAWKRESSRQGCTALHQACTKGHLNVARELLKL DADLASVQDNDGRTPLHYAAMKGRVNIIDEILCYSLDSAHTITTRGETVLHMSVKNNQFEAVKYLVEKLNTAMLLNRPDHDGNTILHLATAGKLSTMVIY LLKVGIEVNAINQKGQTALDVVESDSSNSGPLLILPALLDAGAKKCSQLPPTSSGEILHHHQEMLFMNSPSIRSTLLSPPPSKLVSKSPRHHHDSHHRPH GSSHRRRREKQLAIQNEGLRNARNTIAVVAVLIATVTFAAGINPPGGLNQQSGKAILGHKASFKVFMVCNILALFLSLGVVIVLVSIIPFRRKPMMTILA LAHKVMWVSALFMAAAYLAAVWTVLPHHEAEWVVAIGGGSTALIFVGLSVLLVKHWMRKREYYWMRRKNDEIMMAKKRGNGNLHHNMSSSPNGSGVSGLE ELKAMKKSGRYSSSSNSDVGSSEKEGYHLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10340			Ankyrin repeat family protein ...		Lus10037894 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	21.0	0.8119
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	22.8	0.7733
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10019808 [exp]	23.1	0.8257
AT5G61820			unknown protein		Lus10003210 [exp]	26.1	0.8188
AT3G51520			diacylglycerol acyltransferase...		Lus10013796 [exp]	33.5	0.8060
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	36.9	0.8110
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	49.1	0.7286
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	49.2	0.7748
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	56.3	0.8083
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	60.5	0.7939

Compare expression of checked genes

Lus10037894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.