Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25810 329 / 8e-115 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT3G16240 226 / 2e-74 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT2G36830 216 / 2e-70 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT4G01470 206 / 2e-66 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT3G26520 205 / 5e-66 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT4G17340 200 / 5e-64 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT5G47450 196 / 1e-62 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT1G73190 196 / 4e-62 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 189 / 1e-59 BETA-TIP beta-tonoplast intrinsic protein (.1) AT3G47440 136 / 5e-39 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038293 [exp] 217 / 2e-70 AT3G16240 396 / 2e-141 delta tonoplast integral protein (.1) Lus10023913 [exp] 215 / 6e-70 AT2G36830 391 / 3e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10014411 [exp] 214 / 2e-69 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10004733 [exp] 214 / 2e-69 AT5G47450 393 / 4e-140 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) Lus10007796 [exp] 214 / 2e-69 AT5G47450 389 / 1e-138 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) Lus10005885 [exp] 213 / 4e-69 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10021510 [exp] 212 / 1e-68 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10022611 [exp] 212 / 1e-68 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10025808 [exp] 209 / 2e-67 AT3G16240 389 / 2e-138 delta tonoplast integral protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239700 [exp] 330 / 3e-115 AT2G25810 355 / 5e-125 tonoplast intrinsic protein 4;1 (.1) Potri.006G121700 [exp] 217 / 8e-71 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.016G098200 [exp] 216 / 2e-70 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.003G050900 [exp] 216 / 4e-70 AT3G16240 311 / 5e-108 delta tonoplast integral protein (.1) Potri.008G050700 [exp] 215 / 8e-70 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.001G186700 [exp] 213 / 3e-69 AT3G16240 372 / 8e-132 delta tonoplast integral protein (.1) Potri.010G209900 [exp] 213 / 4e-69 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.003G077800 [exp] 195 / 3e-62 AT4G17340 351 / 2e-123 tonoplast intrinsic protein 2;2 (.1) Potri.001G235300 [exp] 194 / 8e-62 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1) Potri.009G027200 [exp] 194 / 9e-62 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10037895 pacid=23163686 polypeptide=Lus10037895 locus=Lus10037895.g ID=Lus10037895.BGIv1.0 annot-version=v1.0 ATGGCGAAAATTCCATTAGGAAGCTATTCAGAGGCAACGAAGCCTGACTGCATCAAAGCCCTTGTTGTCGAATTCGTCGTCACTTTTCTCTTCGTTTTCG CTGGCGTCGGCTCCGCTATGGCCGCCGGTAAACTAGAGGGAGGCGCGCTGGCGGGGCTGATGTTCGTGGCGGTGGCACACGCTTTTGTTGTGGCAGTGAT GATCTCCGCTGGACACATCTCCGGCGGTCATCTCAACCCAGCTGTCACTATCGGACTACTTCTCGGAGGTCACATCACCGTCGTACGATCGCTCTTGTAC TGGATCATCCAACTCCTCGCTTCTTCCTCCGCTTGTTTCCTTCTTAACTATCTCACCGGAGGATTGGAAACGCCGGTGCACACGCTAGCAAGTGGAGTAG GATACGGGCAAGGAATAGTGTGGGAGATAGTTCTGACATTCTCCCTGATGTTCACTGTGTACGCAACAATGGTTGACCCCAAAAAGGGCTCCCTCGATGG CTTCGGACCACTCCTCACTGGGCTGGTAGTGGGAGCCAACATCATGGTTGGTGGACCCTTCTCTGGAGCTTCGATGAACCCAGCAAGATCATTCGGCCCT GCTTTGGTTGCTGGTGTCTGGACTGATCACTGGGTTTACTGGGTTGGCCCTCTTTTTGGTGGTGGCCTTGCTGGCTTTGTTTACGAGAACTTCTTCATCG TCCGGTCCCACATCCCCCTTTCCAACGAAGATTCCATCTATTGA
AA sequence Show only first row Show all	>Lus10037895 pacid=23163686 polypeptide=Lus10037895 locus=Lus10037895.g ID=Lus10037895.BGIv1.0 annot-version=v1.0 MAKIPLGSYSEATKPDCIKALVVEFVVTFLFVFAGVGSAMAAGKLEGGALAGLMFVAVAHAFVVAVMISAGHISGGHLNPAVTIGLLLGGHITVVRSLLY WIIQLLASSSACFLLNYLTGGLETPVHTLASGVGYGQGIVWEIVLTFSLMFTVYATMVDPKKGSLDGFGPLLTGLVVGANIMVGGPFSGASMNPARSFGP ALVAGVWTDHWVYWVGPLFGGGLAGFVYENFFIVRSHIPLSNEDSIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	0	1
AT2G20080			unknown protein		Lus10012982 [exp]	1.0	0.9631
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	2.4	0.9554
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	2.4	0.9571
					Lus10007012 [exp]	3.7	0.9382
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	4.0	0.9486
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	4.5	0.9315
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	4.9	0.9268
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	7.1	0.9199
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	11.6	0.9212
					Lus10007009 [exp]	12.2	0.9138

Compare expression of checked genes

Lus10037895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.