Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16180 367 / 8e-120 Major facilitator superfamily protein (.1) AT1G52190 363 / 4e-118 Major facilitator superfamily protein (.1) AT1G68570 251 / 4e-75 Major facilitator superfamily protein (.1) AT1G69870 248 / 8e-74 NRT1.7 nitrate transporter 1.7 (.1) AT3G54140 236 / 5e-70 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G18880 236 / 1e-69 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT2G02040 227 / 2e-66 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 222 / 1e-64 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G47960 221 / 7e-64 Major facilitator superfamily protein (.1) AT5G62680 221 / 8e-64 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038616 [exp] 594 / 0 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10035860 [exp] 358 / 1e-115 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 333 / 7e-106 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 326 / 1e-103 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10036669 [exp] 257 / 3e-77 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 257 / 4e-77 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10017817 [exp] 256 / 8e-77 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 255 / 9e-77 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036705 [exp] 247 / 4e-73 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240000 [exp] 416 / 1e-138 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 399 / 8e-132 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 362 / 1e-117 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 347 / 4e-112 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 344 / 7e-111 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 343 / 2e-110 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 342 / 3e-110 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 330 / 1e-105 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 319 / 2e-101 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 313 / 3e-99 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10037896 pacid=23163759 polypeptide=Lus10037896 locus=Lus10037896.g ID=Lus10037896.BGIv1.0 annot-version=v1.0 ATGGAGGAAAATATGGGCGGCGAGAATGGGAAAACAACGGCGGTGGCGCCTCTGATCCGTAAGGAGGGAACGCCCAGAAAGCCAAAGGGTGGCTTCAGAA CCATCCCCTTCATCATATTGAATGAAGGGTTTCAGTCGTTGGCAAGCACAGGGCTACACGCAAACATGGTAATATACTTGACGAACGAGTTCCAGATGGG TGCAGTGACATCGAGCAGCATCATCTCACTCTGGTCAGCTGCTTCTTCATTCATGGCAGTGTTTGGCGCTGTGCTTTCCGACTCTTTCTTAGGCCGGTTC ACAGTCATTCTCATTGGTTCCTCTTTCTCCCTTCTCGACGAGATGGGGTTCATGGTTATATGGTTTACAATGTATGTGCAGGGAACCATTGGGTTGTGGT CAACAGCAGTGGTTCCGGAGTTAAGGCCACCACCATGCGAGTCGATCAATTGCGAGACTACAGCTGCGACGCCAACTCAGTTAGCAATCCTGTACGCATC TCTGGGACTCATATCCCTTGGATCAGGCTGCCTTCTGCCTTGCTCAATGGCATTCGGTGCTGACCAATTGGACAAGAAAGACAACCCAAATAACGAAAGA GAGTTGCAGGGCTTCTTCAACTGGTACTACGCCATTGGCGGAGTTGCCACTTTGCTTGGGCTCACCGTCGTGGTGTATATTCAGGACACCTATGGATGGC CAGTTGGGCTTTCAGTGCCTGCTTTCCTAGTCTTGTTCTCTACTCTCTTGTTTTTGTTGCCTTCCTCCATTTACGTTAAGCACAAGGCTAGAGGCAGCTT GTTTGTGGGTTGCCTCAGAGTTTTGGTGGCTGCTATCTGCAAGGCTAGTTCTAATAGTGTTAAAGATAATGGAGAACAAGAAGGAGTCAACAGTAGTGTT GGGCTTCTTGAGGATTTGGATGACAGTAGGCATGACTATTTTCACGGCCTTGATCACAATGGCTTCATCACCCCTACTCCTCATTTGAGGTGCCTGAACA AAGCTTGCTTGATTGTGAACTCAGAGACGGACATAAACCCAGATGACGGTTCAGCGAAAAACCCATGGACCTTATGCACAGTAGAAGAGGTAGAAGCCAT GAAATCCATAGTCAAAGTGTTACCCATTTGGTCAACAGGCTTCCTATTTTACCTCAGCTTAGCTCAGTCACCATTCATGATCCTCCAAGCAGAAACCATG AACAGACACATCTTCTCCAACTCTTTCGAATTCCCGCCGGGATCACTTGGTTCGTTCAACTTGATAAGTTTCACCCTCTCCATCATCATCTACGACTCCA TACTAATCCCCATCCTTTCCAAGTTCACTGGGAACCCGCGTGGCCTCAGCACCAACGTCCGCCTCGGAGCAGGGATGGTCCTGGCCATCTTGGCCATGGC CATCTTGGCCATGGCCATCTCTGGAGCTGTGGAGTCTATGAGGAGATGGAACGCTACCGCAGAGCAAGACGCGGTGGAGATTTCTGTTTTTTGGTTGATG CCTTCTCTTGTTTTGCTCGGGACGGCTCAGGCTCTGAATTACATTGAGCAGATTTCGTTTTACTACACCCACTTGCCTAAGGCAATGTCAAGTATTGCTG TGGCCATGCTCACTTTGATGACGGCCATTGGGAGCTTGTTGGCGAGTGCGTTGATTGATGTTGTGGATGGTTTCAGTTCCAGTGGAGGGAAGGAGAGCTG GTTGTCTACTAATCTTAACGAGGGTCACTTGGATTATTACTATTTCCTCATTGCTGGGATTTGTTTCCTCAATTTTCTGTATTTCTTGCTCTGTTCCAGG ACTTTCAATTAA
AA sequence Show only first row Show all	>Lus10037896 pacid=23163759 polypeptide=Lus10037896 locus=Lus10037896.g ID=Lus10037896.BGIv1.0 annot-version=v1.0 MEENMGGENGKTTAVAPLIRKEGTPRKPKGGFRTIPFIILNEGFQSLASTGLHANMVIYLTNEFQMGAVTSSSIISLWSAASSFMAVFGAVLSDSFLGRF TVILIGSSFSLLDEMGFMVIWFTMYVQGTIGLWSTAVVPELRPPPCESINCETTAATPTQLAILYASLGLISLGSGCLLPCSMAFGADQLDKKDNPNNER ELQGFFNWYYAIGGVATLLGLTVVVYIQDTYGWPVGLSVPAFLVLFSTLLFLLPSSIYVKHKARGSLFVGCLRVLVAAICKASSNSVKDNGEQEGVNSSV GLLEDLDDSRHDYFHGLDHNGFITPTPHLRCLNKACLIVNSETDINPDDGSAKNPWTLCTVEEVEAMKSIVKVLPIWSTGFLFYLSLAQSPFMILQAETM NRHIFSNSFEFPPGSLGSFNLISFTLSIIIYDSILIPILSKFTGNPRGLSTNVRLGAGMVLAILAMAILAMAISGAVESMRRWNATAEQDAVEISVFWLM PSLVLLGTAQALNYIEQISFYYTHLPKAMSSIAVAMLTLMTAIGSLLASALIDVVDGFSSSGGKESWLSTNLNEGHLDYYYFLIAGICFLNFLYFLLCSR TFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	2.6	0.7770
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	8.2	0.7480
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	10.6	0.7378
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	10.9	0.7586
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	11.9	0.7491
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	16.3	0.7382
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	16.6	0.7458
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	17.0	0.7010
AT3G50790			esterase/lipase/thioesterase f...		Lus10017327 [exp]	18.5	0.6213
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10028656 [exp]	23.2	0.6841

Compare expression of checked genes

Lus10037896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.