Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25757 884 / 0 RNA polymerase I-associated factor PAF67 (.1) AT5G25754 884 / 0 RNA polymerase I-associated factor PAF67 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038622 [exp] 1075 / 0 AT5G25757 890 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241300 [exp] 989 / 0 AT5G25757 902 / 0.0 RNA polymerase I-associated factor PAF67 (.1) Potri.018G038500 [exp] 966 / 0 AT5G25757 879 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10255 [flax] [poplar] Paf67 RNA polymerase I-associated factor PAF67
Representative CDS sequence Show only first row Show all	>Lus10037897 pacid=23163809 polypeptide=Lus10037897 locus=Lus10037897.g ID=Lus10037897.BGIv1.0 annot-version=v1.0 ATGGCCGCCAATTACGACTACGATGAAGCTCCCAGCCGCTACGACGACCAGGCTGCTGCGAACCGACATCAGGAAGTTGGTGGCTACGACCCAAACTTCG TTCCGGATTCCGTGAAATCCTTCGTCGTTCACCTCTATCGCCATATCAGGGAGAAGAATGTTTACGAGATCCACCAGATGTACGAAACTTCCTTCCAGAC TCTGTCCGAGCGGTTGTTCAAGGACACTCCGTGGCCTTCCGTTGAAGCTGTGGCTCATTATGTGGATAATGATCACGTGTTCTGTCTCCTGTACCGTGAG ATGTGGTTCCGCCACCTCTATGCTCGTCTCTCGCCTACTCTTAAGCAGAGGATCGACAGTTGGGACAATTACTGCAGCCTCTTCCAGTGGTCTCTTTTCA AAATGTGCTCTCTTATGGTGCGGGTTCAGGTCGTGTTGCATGGAGTAGTGAATATGCAGTTGCCGAATCAGTGGCTGTGGGATATGGTGGATGAGTTCGT TTACCAGTTTCAGAGCTTTTGCCAGTTTAGAGCTAAGATGAAGACCAAGACTGAGCAAGAGATTGCGCTTCTGAGGCAATTTGATCAGGCATGGAATGTA TATGGAGTGCTCAACTTCTTGCAAGCACTGGTCGAAAAGTCAACTATCACTGAGATCTTGGAGCAGGAGAAGGAAGGCCTTGAACAATTCACTGCCACTG ATGGTTATGATTACAGTGGTGGAAGCAATGTTCTAAAGGTGCTGGGATACTTCAGTATGATTGGTTTGTTGAGAGTTCACTGCCTTCTGGGAGACTATCA TACTGGCCTCAAGTGCTTACAACCCATTGACATAAGTCAACAAGGTGTCTACACCAGTGTTATAGGAAGCCACATCACTACCATATACCATTATGGCTTT GCAAACCTTATGCTCAGGAGGTATGTAGATGGTATCCGGGAGTTCAACAAAATTCTGCTGTATATTTACAAGACCAAGCAATATCATCAGAAGTCCCCAC AGTATGAACAAATACTAAAGAAGAATGAGCAAATGTATGCCTTGCTTGCAATTTGTCTGTCACTTTGCCCTCAACTGAAGCTTGTTGAGGAGACTGTGAA CTCTCAGTTACGTGAGAAGTATGGGGAAAAGATGGGTAGAATGCAGAGATATGATGATGAGGCATTTGCTATGTATGATGAGCTCTTCTCCTATGCATGT CCAAAGTTCATTACCCCTTCAGCACCAAGCTTTGACGAGCCTCTTGTAAATTATAACCAGGATGCTTATAGATTGCAGTTGAAGCTTTTCCTTTATGAGG TGAAGCAGCAACAACTTTTATCTGGTGTGCGGACCTTCCTTAAAGTTTATTCAACTATATCACTTGGAAAGCTTGCTAATTACTTAGAAGTTGATGAACC CTCATTAAGGACAATATTGATGGCATACAAGCACAAGACTCATGCAGTTGATTCTGATGGGAAGATCATCTCCAACGCTGATGTTGATTTCTACATTGAC GATGACATGTTACGTGTTGTTGACTCCAAACCAGTGAAGCGATATGGGGATTTCTTCTTGCGGCAAATTGTGAAGCTTGAAGGAGTGATGAACGATCTTG ATAGGATAAAGCTGGATTAA
AA sequence Show only first row Show all	>Lus10037897 pacid=23163809 polypeptide=Lus10037897 locus=Lus10037897.g ID=Lus10037897.BGIv1.0 annot-version=v1.0 MAANYDYDEAPSRYDDQAAANRHQEVGGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQTLSERLFKDTPWPSVEAVAHYVDNDHVFCLLYRE MWFRHLYARLSPTLKQRIDSWDNYCSLFQWSLFKMCSLMVRVQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKMKTKTEQEIALLRQFDQAWNV YGVLNFLQALVEKSTITEILEQEKEGLEQFTATDGYDYSGGSNVLKVLGYFSMIGLLRVHCLLGDYHTGLKCLQPIDISQQGVYTSVIGSHITTIYHYGF ANLMLRRYVDGIREFNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQLKLVEETVNSQLREKYGEKMGRMQRYDDEAFAMYDELFSYAC PKFITPSAPSFDEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRTFLKVYSTISLGKLANYLEVDEPSLRTILMAYKHKTHAVDSDGKIISNADVDFYID DDMLRVVDSKPVKRYGDFFLRQIVKLEGVMNDLDRIKLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	0	1
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	1.0	0.9603
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	1.4	0.9602
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	2.8	0.9469
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	4.2	0.9492
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10010551 [exp]	4.2	0.9232
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	5.5	0.9413
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	6.3	0.9326
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	7.3	0.9178
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	7.4	0.9316
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	8.9	0.9121

Compare expression of checked genes

Lus10037897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.