Plant FIBer expression Database

Lus10037899 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11500 343 / 1e-121 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038625
[exp]
348 / 4e-124 AT5G11500 351 / 4e-125 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G241900
[exp]
360 / 3e-128 AT5G11500 348 / 2e-123 unknown protein
Potri.018G037800
[exp]
353 / 8e-126 AT5G11500 340 / 4e-120 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0684 NFACT_RNA-bind PF05670 NFACT-R_1 NFACT protein RNA binding domain
Representative CDS sequence
>Lus10037899 pacid=23163646 polypeptide=Lus10037899 locus=Lus10037899.g ID=Lus10037899.BGIv1.0 annot-version=v1.0
ATGGTATTCTACTTCAAAGCCCGACCAGAGGTCGGAGATTACACAATTTTCATGGGTCTCGACAAGTATGAAAACGAGGAGCTCATCAAATACGGCTTCC
CCGAAGATATCTGGTTTCATGTGGACAAAATGTCTTCAGCTCATGTTTATGTTCGGCTGCACAAGGGTCAGACTCTGGACAACATAAGTGAAGGATTGCT
TGAAGATTGGAACAAAGTTAACAACATTGATGTTGTTTACACTCCCTGGTCAAATTTAAAGAAGACTGCTTCAATGGATGTTGGTCAAGTTGGGTTTCAT
AATTCAAAGATGGTCCGTACTGTGAAAGTGGAGAAGCGGATCAATGAGATAGTCAATAGGCTGAACAAAACAAAAGTGGAAAGGACGCCCGATTTGAGAG
CTGAGAGAGAAGCTGTAAATGCAGCAGAAAGGGCTGAGAGGAAGCTTCATCTGAGAGATAAGAAACGACGGGAGGAAATGGACAGGCTTGAAAAGGAGAG
GCAGGCAGAGATGAGGAGCTACAAGGGACTGATGGTGGCAGAAAAGATGACTTCCAACAAACAGATCGCATCAGAAAGCAAGTCCCTGCAGGAGCTTGAA
GACGATTTCATGTGA
AA sequence
>Lus10037899 pacid=23163646 polypeptide=Lus10037899 locus=Lus10037899.g ID=Lus10037899.BGIv1.0 annot-version=v1.0
MVFYFKARPEVGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGQTLDNISEGLLEDWNKVNNIDVVYTPWSNLKKTASMDVGQVGFH
NSKMVRTVKVEKRINEIVNRLNKTKVERTPDLRAEREAVNAAERAERKLHLRDKKRREEMDRLEKERQAEMRSYKGLMVAEKMTSNKQIASESKSLQELE
DDFM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11500 unknown protein Lus10037899
[exp]
0 1
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Lus10001237
[exp]
2.0 0.9315
AT1G16810 unknown protein Lus10034837
[exp]
2.2 0.9282
AT2G25950 Protein of unknown function (D... Lus10007454
[exp]
2.6 0.9459
AT2G37480 unknown protein Lus10003982
[exp]
6.5 0.9212
AT2G26430 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3... Lus10036509
[exp]
7.0 0.9261
AT5G58220 ALNS, TTL allantoin synthase, transthyre... Lus10035966
[exp]
7.3 0.9335
AT4G22310 Uncharacterised protein family... Lus10023745
[exp]
9.4 0.9342
AT5G37720 DIP2, ALY4 interacting with DNA-binding d... Lus10000446
[exp]
10.6 0.9104
AT4G34840 ATMTN2, ATMTAN2 ARABIDOPSIS METHYLTHIOADENOSIN... Lus10026287
[exp]
10.8 0.9101
AT3G12480 CCAAT NF-YC11 "nuclear factor Y, subunit C11... Lus10024082
[exp]
11.7 0.8768

Lus10037899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.