Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24570 184 / 5e-58 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G14860 44 / 3e-05 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G03410 42 / 0.0003 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038626 [exp] 330 / 8e-116 AT3G24570 273 / 1e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10022130 [exp] 215 / 1e-70 AT3G24570 256 / 6e-87 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10011679 [exp] 210 / 1e-68 AT3G24570 249 / 2e-84 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10034922 [exp] 194 / 3e-62 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 192 / 2e-61 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10011424 [exp] 47 / 4e-06 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 46 / 1e-05 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037100 [exp] 236 / 1e-78 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 206 / 7e-67 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.006G242700 [exp] 180 / 4e-57 AT3G24570 214 / 4e-71 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.009G090600 [exp] 44 / 5e-05 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 41 / 0.0004 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10037900 pacid=23163724 polypeptide=Lus10037900 locus=Lus10037900.g ID=Lus10037900.BGIv1.0 annot-version=v1.0 ATGTTCAACTTCTGGAAATGGTTTCAGCATTGCTTGGCACTACATCCGGTGAAGGCCCAGATGCTTAGCTCTGGCTTGATTTGGGGTGCTGGTGATATTG CTGCACAATCCATTAACAATTACACGGCTCAGAAGCCTCTTGTGTTCCAGGATGATGAAATACGTGAAAAGATAAACTGGAAACGAGTAGCAACCACAAG CTTGTTTGGATTTGGATTTGTTGGACCAGTTGGGCACTTCTGGTCTAGACAGATTCATGGGGTCACACAACTGTTTCGACCGAATTCGTTACGATTTGTT GGGGTGAAAGTGGCGATTGATGGATTCCTTTTCGGGCCGTTGGATCTACTATTGTTTTTCACATACATGGGGATTGGTGCTGGAAAGAGTGTCCCCCAAA TAAGGGAGGATGTGAGGAGAGATTTCCTCCCAGCATTCATGATGGAAGGACGGGTGTGGCCGATTGTTCAAGTGATAAACTTCCGTTTCGTACCCGTGAA ATATCAGCTTTTGTATGTAAACTTATTCTGCTTGTTGGGTAGTTGCTTCCTCTCGTGGTTGGAGCAACAACATAATGCTCCATGGAAGGCATGGCTGAAT TCTCTGCTACCTTTCCAAGGAGAAAAAAGGGTGATCCAAGCAAAAGAACAATGGAAAGCAATGCTGAAACCAAGAATGTTCAGCCAAGACTTCAAATTAG TACATCTAGAAGAGATTGTAAATGCTAGATGGTGTGCTTATTTGCCCAATTTTTGA
AA sequence Show only first row Show all	>Lus10037900 pacid=23163724 polypeptide=Lus10037900 locus=Lus10037900.g ID=Lus10037900.BGIv1.0 annot-version=v1.0 MFNFWKWFQHCLALHPVKAQMLSSGLIWGAGDIAAQSINNYTAQKPLVFQDDEIREKINWKRVATTSLFGFGFVGPVGHFWSRQIHGVTQLFRPNSLRFV GVKVAIDGFLFGPLDLLLFFTYMGIGAGKSVPQIREDVRRDFLPAFMMEGRVWPIVQVINFRFVPVKYQLLYVNLFCLLGSCFLSWLEQQHNAPWKAWLN SLLPFQGEKRVIQAKEQWKAMLKPRMFSQDFKLVHLEEIVNARWCAYLPNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10037900 [exp]	0	1

Compare expression of checked genes

Lus10037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.