Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25590 598 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 509 / 7e-179 unknown protein AT1G02110 179 / 3e-49 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 164 / 9e-44 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT3G60320 144 / 8e-37 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 123 / 5e-30 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 119 / 2e-28 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 114 / 9e-27 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G21740 112 / 4e-26 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 107 / 2e-24 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022116 [exp] 716 / 0 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10038627 [exp] 627 / 0 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 549 / 0 AT1G52320 652 / 0.0 unknown protein Lus10035887 [exp] 541 / 0 AT1G52320 747 / 0.0 unknown protein Lus10002864 [exp] 428 / 6e-150 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10000014 [exp] 285 / 1e-95 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041884 [exp] 172 / 4e-48 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 173 / 2e-47 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024007 [exp] 148 / 4e-38 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036400 [exp] 670 / 0 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 645 / 0 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 535 / 0 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 528 / 0 AT1G52320 615 / 0.0 unknown protein Potri.005G112300 [exp] 182 / 6e-51 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 179 / 1e-49 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 169 / 2e-45 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.014G047400 [exp] 168 / 4e-45 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 166 / 2e-44 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.002G137600 [exp] 157 / 3e-41 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10037901 pacid=23163933 polypeptide=Lus10037901 locus=Lus10037901.g ID=Lus10037901.BGIv1.0 annot-version=v1.0 ATGGATGTTTTAGGTCAGATTGACGATCATTTCCTCAAGGCTTCTGAGGCTGCTCAGGACGTATGCAAGATGCTGGAAGCCACTCGCCTCCATTACCATT CCAATTTTGCTGACAATCGAGGGCACATTGATCATTCTGCGAGGGTTATGCGTGTGATCACTTGGAATAAATCTTTTAAGAATGCAACCAGCGATGGAGA AGGAGGCAGAGATGACTTGGATTCCGAGGATTACGAAACTCATGCCACTGTTTTGGATAAGTTGTTGGCCTGGGAAAAGAAACTCTTTGATGAAGTCAAG CAAGGAGAGCTGATGAAGCTGGAGTACAAAAGGAAGGTTGCGTTGCTAAACAAGCAGAAGAAACGTGGTGCTAGTGCTGACTCCTTGGAAAAGACTAAAG CTGCAGTGAGTCATTTGCACACTGGATATATTGTTGATATGCAATCTATGGACTCCACTGTTGCTGAAGTTAATCACATACGCGATAACCAGTTGTATCC TAAACTTGTTGCTCTTGTCCAAGGTATAGTTTCCTTTGAGGCAAGTTGCTCGCCAGCTGACCAAAATGGCTATATTCCTGATGTACTACACAGGATGTCA AAGATGTGGGGGAACATGTCGATCCACCACGAAAGCCAACTAAAGATTGTAATGGACCTTAAAACGCTTGATGTGGCCCATGCCATTAAAGAAACAACGA GGCACCACCACGAACAGACCAGCCAACTATGTGATGTTGTCGAGAAATGGAATGCACAGTTCGATAGGCTCGTGACGTATCAAAAGCAATACATCAATTG TCTCAATAGCTGGTTAAAGCTAAACCTCATCCCGATAGAAAGCAGCTTGAAAGAGAAGATATCATCCCCGCAACGAGTCCAGAATCCCCCAATCCAACCC CTTCTCCATGCGTGGCACGATCATCTCGAAAGGCTACCAGACGAGCTAGCCAAAACTGCAATCTCTTCTTTTGAAGCCGTGATCAGAACCATCAAAGTCC ACCAAGAAGAAGAGATGAAGCTAAAGGAGAGATGTGAAGAAACTAGAAAGGAGTATATCAGAAAGCGACAGGGTTTTGAGGACTGGCATCAAAAGCACGT AATGCGGAGAGGTCCATCTGACGAAACGGGAGGCGAGGATGTAAATGCAAAGGATCCAGTTGGGGAGAGGCAGTTTGCGGTTGAGAGCTTGCAGAAGAGA CTAGAAGAGGAAGTGGAAGCACACCAGAGACATTGCCTGCAAGTTAGGGAGAAGTCGGTGGGAAGTCTGAAGATCCGTTTACCTGAGTTGTTTCGCGCTA TGTCCGACTACTCCCGTGCCTGTTATGAAGCATATGAGAGACTCAGGGCCATTACTGAGTTTCAGCACTCGAACCGGGGGACTTTGTGA
AA sequence Show only first row Show all	>Lus10037901 pacid=23163933 polypeptide=Lus10037901 locus=Lus10037901.g ID=Lus10037901.BGIv1.0 annot-version=v1.0 MDVLGQIDDHFLKASEAAQDVCKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNKSFKNATSDGEGGRDDLDSEDYETHATVLDKLLAWEKKLFDEVK QGELMKLEYKRKVALLNKQKKRGASADSLEKTKAAVSHLHTGYIVDMQSMDSTVAEVNHIRDNQLYPKLVALVQGIVSFEASCSPADQNGYIPDVLHRMS KMWGNMSIHHESQLKIVMDLKTLDVAHAIKETTRHHHEQTSQLCDVVEKWNAQFDRLVTYQKQYINCLNSWLKLNLIPIESSLKEKISSPQRVQNPPIQP LLHAWHDHLERLPDELAKTAISSFEAVIRTIKVHQEEEMKLKERCEETRKEYIRKRQGFEDWHQKHVMRRGPSDETGGEDVNAKDPVGERQFAVESLQKR LEEEVEAHQRHCLQVREKSVGSLKIRLPELFRAMSDYSRACYEAYERLRAITEFQHSNRGTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	0	1
AT5G16250			unknown protein		Lus10026857 [exp]	1.0	0.9542
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	1.4	0.9496
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002391 [exp]	1.7	0.9481
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	5.2	0.9431
AT5G07670			RNI-like superfamily protein (...		Lus10031742 [exp]	5.7	0.9470
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	6.3	0.9423
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	7.1	0.9463
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10042869 [exp]	7.5	0.9306
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	8.5	0.9345
AT2G25270			unknown protein		Lus10001929 [exp]	8.7	0.9376

Compare expression of checked genes

Lus10037901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.