Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25590 82 / 2e-17 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 74 / 8e-15 unknown protein AT3G60320 62 / 2e-10 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 61 / 3e-10 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 50 / 9e-07 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT3G51290 47 / 9e-06 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT2G19090 46 / 2e-05 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 46 / 2e-05 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 44 / 7e-05 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 42 / 0.0004 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038627 [exp] 107 / 2e-26 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10022116 [exp] 98 / 8e-23 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10035887 [exp] 77 / 1e-15 AT1G52320 747 / 0.0 unknown protein Lus10025777 [exp] 75 / 7e-15 AT1G52320 652 / 0.0 unknown protein Lus10041885 [exp] 49 / 3e-07 AT3G51290 91 / 5e-22 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10020008 [exp] 50 / 1e-06 AT2G19090 214 / 6e-63 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 49 / 2e-06 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 49 / 3e-06 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10036155 [exp] 45 / 6e-05 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036400 [exp] 94 / 2e-21 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 93 / 4e-21 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.001G181100 [exp] 79 / 2e-16 AT1G52320 615 / 0.0 unknown protein Potri.003G054800 [exp] 79 / 3e-16 AT1G52320 626 / 0.0 unknown protein Potri.014G047400 [exp] 61 / 2e-10 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 58 / 3e-09 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G112300 [exp] 54 / 4e-08 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 54 / 6e-08 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G077000 [exp] 52 / 2e-07 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 47 / 1e-05 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10037902 pacid=23163870 polypeptide=Lus10037902 locus=Lus10037902.g ID=Lus10037902.BGIv1.0 annot-version=v1.0 ATGGGTTGCGCCCAATCTAAGGTGGACAACGAGGAATCAGTAACCAGATGCAAGGAGCGGAAAATCCTCATGAAGGAGGCGGTGGCCGCCAGGAACGCCT TCGCCGCCGCTCATTCTGGCTACGCCATGTCTCTTAAGAACACAGGCGCCGCTCTCAGCGATTACGCTCACGGCGAAGCCGACCCCTCTTCTCTTCCTTC TTCCCTGCAGCAGTACCAGCAGCAGCCGCCTCCTGTGGTTGCCGGTTCCGACCCACAGCCTCCGCCGCCCCCTCCTCCTCTGCCGTCTACAGACCACCTA CACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCAGAGAGCGGGGCGGCGGGATTTGGATTCCATCGCCATTGCTGAAGAAGATGAAGAGGAGGAAG AAGAAGAGGAGGAGGAAGAGCAATTGGATCACAGCTTTAGAAACAGAGGGGGACCACATCCTGAGAAAGTGGGGCCTGGAGATTCACAGCTGCGGGCCCC ACCACCACCGGGGAACCATCCGGTTCCGCCGATGCCGGAAGCCAAGGGCATGGCTTGGGATTATTTCTTTATGATGGAAAATATGCCTGGCTCCACCCTA GAGGAAGAAGAAGAAGATGATGATGATGGAAACGAGAATCACGATTTCGTTGAGGAACCCAAGACGCCGGAGATGGCGGCGGCAAAGATGAAGCCGTCGG CGGCGGCGGTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTTAGTAAAGGGAAGCAGCAGATTCAACATTCACAAACGGCGCCGGCGGATTTTAT GAGGGCGGGGAACAAGGTTGGTTTGGGAGTGTAG
AA sequence Show only first row Show all	>Lus10037902 pacid=23163870 polypeptide=Lus10037902 locus=Lus10037902.g ID=Lus10037902.BGIv1.0 annot-version=v1.0 MGCAQSKVDNEESVTRCKERKILMKEAVAARNAFAAAHSGYAMSLKNTGAALSDYAHGEADPSSLPSSLQQYQQQPPPVVAGSDPQPPPPPPPLPSTDHL HXXXXXXXXXXKQRAGRRDLDSIAIAEEDEEEEEEEEEEEQLDHSFRNRGGPHPEKVGPGDSQLRAPPPPGNHPVPPMPEAKGMAWDYFFMMENMPGSTL EEEEEDDDDGNENHDFVEEPKTPEMAAAKMKPSAAAVEEEEEEEEEEGVSKGKQQIQHSQTAPADFMRAGNKVGLGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	0	1
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	1.4	0.9568
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	1.7	0.9506
AT3G52110			unknown protein		Lus10029522 [exp]	3.6	0.9351
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	3.9	0.9472
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	6.5	0.9458
AT4G17000			unknown protein		Lus10035651 [exp]	7.5	0.9510
AT3G22520			unknown protein		Lus10041202 [exp]	8.9	0.9281
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	10.4	0.9420
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	10.5	0.9405
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	11.2	0.9343

Compare expression of checked genes

Lus10037902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.