Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11470 183 / 2e-49 bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G15605 112 / 3e-26 nucleic acid binding (.1.2.3.4) AT4G19020 53 / 6e-07 CMT2 chromomethylase 2 (.1) AT3G43990 45 / 0.0001 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT1G69770 45 / 0.0002 CMT3 chromomethylase 3 (.1) AT1G80740 44 / 0.0004 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038628 [exp] 949 / 0 AT5G11470 181 / 7e-49 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10014315 [exp] 48 / 3e-05 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10017720 [exp] 48 / 3e-05 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 45 / 0.0002 AT1G69770 824 / 0.0 chromomethylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244000 [exp] 338 / 4e-108 AT5G11470 373 / 1e-119 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.018G036500 [exp] 333 / 2e-107 AT5G11470 209 / 6e-59 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G174700 [exp] 176 / 5e-50 AT3G15605 150 / 2e-41 nucleic acid binding (.1.2.3.4) Potri.003G100000 [exp] 46 / 0.0001 AT4G19020 1017 / 0.0 chromomethylase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10037903 pacid=23163783 polypeptide=Lus10037903 locus=Lus10037903.g ID=Lus10037903.BGIv1.0 annot-version=v1.0 ATGGGTGAAATTGATGAAGAAGGATGCACCGGATTCCGATGGACTTCAGAGCGAAGACTTGGTGGAAAGAATAAGAACATCTCGTTCTATGAGTCTTTTG TCTATGAAGGGGAGGAGTATAGACTGTATGACTCAGTGTATGTTTACACAAAAGATGAGGATGAGCCTGAAATTGGGAAGCTGATAAATGCCTGGGAAAC AGCCGATGGGGAAAGAAGAGCTAGGATCTTGTGGTTTTATCGCCCTCGTGATATAGTTAATCACTTCAAAGGGGAAAAACATAAGAATGAATTGTTTCTA GCAGCTGGTGAAGGGAAAGGGCTTCTGAATAACAATCCCTTGGAAGCTATTGCTGGGAAATGCAATGTTATTTGCACTTCAAGAGACAACAGAAATCCTC AACCCTCCAAAGAAGCAATTACTGGCGCAGACTTCGTATTTTGCCGTTGCTTTGATGTTGGCCAATGCAAGATATTGGAGAAGATGGCTGAGAAAATTGC TGGAATTGACGTCAAATTTTTGTTTAATCGCGATAGGGAGGCACCTCTCGGTGTTTCAAATTCCGGGTCAAAGAGAAAGGAAATTGTAGATATGGATCCT CGTTCCATTGGTTCATCTTTGCAGGAGAATCCTACCTCTACTCTAGGATTTAGTGTTGATAATATGGAGGCCGATCATACTACTAAAATTGGTGAGACTG GTCATAACCCATCTTTTGCGTGTACCGACAATGCCAAGAGGTCTATCTCTCCTATACGAACCATGGAGAATTCTAAAATTGCAAAGCATACACACGGGAG GAAGGAAGATCTAAAGCAAAATGAAAGCACCATGGAGAACTCTAAAATTTCGAAGGATGCACACAAGAGGAAGGAAGGTCTAAACCAAAATGAATGCACC ATGGAGAACTCTAAAAGTGCAAAGGATGTACTGGGGAGGAGGGAAGGTCTAAAGCAAAATGAGCGCTCTTGTAATGCCGGTTACACTAGCAATGCCAAGA GGCCCATCTCCCCCACTGCGAAGGATGTACATGGGAGTGAAGAGGGTCCTAAGAGGCAAAAACTTGATGCAGAGCTTGGTAGGCTGGTTAATGCAACTCA AGTCCATTCCTCCGATGCTAGCAAAAGGATTGATAATCGAGTGTCTGAAATGCCTGTCATTCTTTGGCAAGACGAGATGAAAGCTGGGTATGAGGATGGA AGTCTCGTTCTTCTTCTTAACTTGAATCCATCATACACTTCGGTTGAAGTGCAGGAGTTGATAAAGGATTCTTGTATGGAAACCTGTACGGCAAAGATGG TTCAGCGGACAGCTTTTTCTAATCCTCACTCTGGTAAAGCTTTCGTCAAGTTCATGTCAAAGGAAGTAGCAGAGAGGGTTATTTTGAAGTTGACTGAAGG TTGTCTGTTGTTACCTGGTGGAAGGTCTGTTGTGGGCAGGATTATGACTATTGGTTTTAAAGGAAAGCAGTCACCATTCTACGGTCATTTTGGTATTGAT AAACTCATACACCAAATGCAGCGAAACAAGCTCCTGCTTCAGGGTAGTCTCCCTATGACCGAGATGTTGGATGGCCACCATGTGCCTGTTGCGACAATTT GCGCGAGATGTTATGAGGAGGAATCAGTGCTTCATGCTATCAGGGATTGTTTAGCTATTCGACAAATGTGGTTCCATATCCTCCGGACAACTTGGATCTA TTTGGATACGATTGAATGGATTGCGTACAACTTTCATGTCAAGGGGACGACACCTTGCACGGATCTAGAGTGGAACGACTAG
AA sequence Show only first row Show all	>Lus10037903 pacid=23163783 polypeptide=Lus10037903 locus=Lus10037903.g ID=Lus10037903.BGIv1.0 annot-version=v1.0 MGEIDEEGCTGFRWTSERRLGGKNKNISFYESFVYEGEEYRLYDSVYVYTKDEDEPEIGKLINAWETADGERRARILWFYRPRDIVNHFKGEKHKNELFL AAGEGKGLLNNNPLEAIAGKCNVICTSRDNRNPQPSKEAITGADFVFCRCFDVGQCKILEKMAEKIAGIDVKFLFNRDREAPLGVSNSGSKRKEIVDMDP RSIGSSLQENPTSTLGFSVDNMEADHTTKIGETGHNPSFACTDNAKRSISPIRTMENSKIAKHTHGRKEDLKQNESTMENSKISKDAHKRKEGLNQNECT MENSKSAKDVLGRREGLKQNERSCNAGYTSNAKRPISPTAKDVHGSEEGPKRQKLDAELGRLVNATQVHSSDASKRIDNRVSEMPVILWQDEMKAGYEDG SLVLLLNLNPSYTSVEVQELIKDSCMETCTAKMVQRTAFSNPHSGKAFVKFMSKEVAERVILKLTEGCLLLPGGRSVVGRIMTIGFKGKQSPFYGHFGID KLIHQMQRNKLLLQGSLPMTEMLDGHHVPVATICARCYEEESVLHAIRDCLAIRQMWFHILRTTWIYLDTIEWIAYNFHVKGTTPCTDLEWND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	0	1
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	1.4	0.9222
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	1.7	0.9016
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	2.0	0.8991
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	2.4	0.9060
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	3.5	0.8889
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	5.0	0.8599
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	6.5	0.8729
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	6.9	0.8741
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	8.0	0.8716
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	8.4	0.8982

Compare expression of checked genes

Lus10037903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.