Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32650 691 / 0 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT2G26650 477 / 1e-158 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT5G46240 457 / 5e-153 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 438 / 2e-145 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32500 435 / 8e-142 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G25600 424 / 2e-137 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 416 / 1e-135 AKT3, AKT2/3 potassium transport 2/3 (.1) AT3G02850 271 / 2e-80 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 262 / 4e-77 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT1G15990 69 / 7e-12 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007670 [exp] 922 / 0 AT4G32650 724 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10043298 [exp] 462 / 2e-152 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 459 / 5e-151 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10028128 [exp] 454 / 6e-151 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10042831 [exp] 452 / 3e-150 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10033052 [exp] 443 / 4e-145 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 431 / 3e-140 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 416 / 4e-140 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10015474 [exp] 427 / 2e-139 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035500 [exp] 861 / 0 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.006G245000 [exp] 837 / 0 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 817 / 0 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G071400 [exp] 470 / 1e-155 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 465 / 4e-155 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G249900 [exp] 453 / 9e-149 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 453 / 1e-148 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 427 / 2e-139 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.017G135400 [exp] 265 / 4e-78 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.012G043000 [exp] 262 / 6e-77 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037904 pacid=23163730 polypeptide=Lus10037904 locus=Lus10037904.g ID=Lus10037904.BGIv1.0 annot-version=v1.0 ATGTCAGAAACAAGGTCACCGCTGCCATTGCTATTCCGGCGGAGGTCCAGTGGCGAAATCCTCAAGAACTTGGCCTCTGTTTCAAGCAGCCTCTTGCCAG CTTTTGGAACTGTGGTTGATGAAGGATACTTGCACCTAAAGAAATTCGTCATTGCTCCTTATGACCACAGATACAGATTACTGTTCATACCATTTCTGGG AGGATGCAGATTGTGGCAAACGTTCCTAGTAGTGCTGGTGGTGTACTCTGCATGGGCATCAATATTCGAGTTAGCTTTTAAGAAAACGTCTACAGGAATA CTCTTAGGCATCGATTTGGCAGTGGATGCCTTCTTTGCCATCGACATCGTTCTCACTTTCTTCGTGGCATATCTCGACAAAACCACCTATCTTCTTGTTG ATGATCACAAGAAAATCGCCATCAGGTACCTCACAAAACCATGGTTCATAATGGACGTGGCCTCGACCCTACCATTTCCGCTCATCTACAGAATCTTCAC TGGGAAAATCAGTCACCAAGGCGTCTTTGGTTTCCTTAACTTGCTTCGCCTCTGGAGATTAAGACGTGTCAGCCAACTCTTCACAAGGCTGGAGAAAGAC ACACGGTTCAGCTATTTCTGGACCAGGTACTTCAAGCTAATTGGGGTTACGCTATTAGCTGTGCACTCAGCAGGATGCTTCTACTACTGGCTGGCTTACC ATCATCCGGTTGAAGCAAATACGTGGATTGGTACGGAAGTCCCCAATTTCAAAGAACGAAGCATTTGGCTGGGCTACACTTATTCTCTGTACTGGTCAAT CGTCACCCTCACCACAGTTGGTTATGGCGACCTACATGCAGTAAATACTACAGAGAAGGTTTTCAACATGCTTTATATGCTGTTTAACATTGGTCTCACT GCATACCTGATCGGAAACATGACCAATCTTGTTGTCCACAGTGCTGTTCGAACTTTTATAATGAGAGATGCCATCAATGAAATACTGAGGTATGCAAATA AAAACCGCCTCCCAGAAGGATTGAAAGAGCAAATGCTAGCACACATGCAACTCAAGTTCAAAACAGCAGAGCTAAAGCAAGAGGAAGTTCTAGAGGACCT TCCTAAGGCAATAAGATCTAGCATATCTCAGCATCTATTTCGTACCACGGTTGAGAAGGCTTACTTGTTCAGAGGAGTTTCGGAAGACCTTATCACCCAG TTGCCAGTGATATCATTGACGTGTGAGGAAAGCCCTATGCAGTTCAGGAAGGATAGTTTTAACAGTACTTTGTTGCACGTCTTGTTCCAGGTGTCAGAGA TGAAAGCTGAGTATTTCCCACCTAAGGTTGAGATTATACTACAAAACGAGATCCCAACAGATTTCTATGTTATGATTTCTGGAGCTGTGGATGTGCTGAC CTACAAGAATGGTACAGAACAGTTTTTGTCAAAACTAGGAGGTGCAGATATGGCGGGTGAGATTGGAGTGATGTTCAACATTCCACAACCTTTTGTTGTG AGGACTAAGAGGCTTTCCCAGGTAGTCCGAATTAGTCATCAACAATTCAAGCAGATAGTACAGCCACACAGTGAAGATGGCAAGAAGATCATCAGCAACT TCACCCAGCAAACAATTCCAAGCAACGATCAACAGGACCTTCAAGCAACCAACTCCCTCGAAGATGACAGTACACAAGGTACAAACGGAACTTCTACTTC AGTATCTAACCAGTGTTACGTACGGGTAATAATCCATGAGCATCACCCAAAGGAACTTCCAACAGAGAAAGACATATTTGGAAAGCTAATATATCGGCCA GATACGCTTGAGGAACTTTTCACATTGGCAGAAAAGAAGTTCGGAAAGAGAGGAAACAAAGTTCTTATGGATGATGGCTCCCAGGTTGAAGAATTGGATG CCCTAAGAGAGAATGACCACTTGTTTATCTTTTAG
AA sequence Show only first row Show all	>Lus10037904 pacid=23163730 polypeptide=Lus10037904 locus=Lus10037904.g ID=Lus10037904.BGIv1.0 annot-version=v1.0 MSETRSPLPLLFRRRSSGEILKNLASVSSSLLPAFGTVVDEGYLHLKKFVIAPYDHRYRLLFIPFLGGCRLWQTFLVVLVVYSAWASIFELAFKKTSTGI LLGIDLAVDAFFAIDIVLTFFVAYLDKTTYLLVDDHKKIAIRYLTKPWFIMDVASTLPFPLIYRIFTGKISHQGVFGFLNLLRLWRLRRVSQLFTRLEKD TRFSYFWTRYFKLIGVTLLAVHSAGCFYYWLAYHHPVEANTWIGTEVPNFKERSIWLGYTYSLYWSIVTLTTVGYGDLHAVNTTEKVFNMLYMLFNIGLT AYLIGNMTNLVVHSAVRTFIMRDAINEILRYANKNRLPEGLKEQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSISQHLFRTTVEKAYLFRGVSEDLITQ LPVISLTCEESPMQFRKDSFNSTLLHVLFQVSEMKAEYFPPKVEIILQNEIPTDFYVMISGAVDVLTYKNGTEQFLSKLGGADMAGEIGVMFNIPQPFVV RTKRLSQVVRISHQQFKQIVQPHSEDGKKIISNFTQQTIPSNDQQDLQATNSLEDDSTQGTNGTSTSVSNQCYVRVIIHEHHPKELPTEKDIFGKLIYRP DTLEELFTLAEKKFGKRGNKVLMDDGSQVEELDALRENDHLFIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	0	1
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	1.0	0.9742
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	3.2	0.9714
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	3.5	0.9701
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	4.9	0.9642
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	7.7	0.9604
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	8.4	0.9613
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	8.9	0.9552
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10020977 [exp]	11.4	0.9497
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	12.0	0.9572
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	12.7	0.9599

Compare expression of checked genes

Lus10037904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.