Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24480 426 / 3e-146 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 432 / 3e-145 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT5G25550 395 / 7e-135 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 404 / 4e-133 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 379 / 1e-123 LRX2 leucine-rich repeat/extensin 2 (.1) AT3G22800 365 / 1e-122 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 367 / 3e-120 LRX1 leucine-rich repeat/extensin 1 (.1) AT4G33970 361 / 4e-118 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 366 / 1e-117 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 357 / 2e-116 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038631 [exp] 573 / 0 AT4G13340 355 / 8e-120 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 432 / 2e-145 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 357 / 1e-120 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 356 / 7e-118 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039363 [exp] 349 / 8e-115 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 340 / 1e-113 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 329 / 4e-109 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 327 / 3e-108 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 322 / 1e-103 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245600 [exp] 455 / 1e-156 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 426 / 6e-145 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 428 / 3e-144 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 418 / 2e-141 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 376 / 1e-127 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 379 / 4e-127 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G081200 [exp] 386 / 4e-126 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.010G083100 [exp] 350 / 4e-118 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 350 / 4e-115 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 353 / 1e-113 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037905 pacid=23163865 polypeptide=Lus10037905 locus=Lus10037905.g ID=Lus10037905.BGIv1.0 annot-version=v1.0 ATGAGGGTAAAACATACCATTTCTATCGTCATCGTTCTCATCCTCCTACCTTCCTTTCAATTGTTCATCGCTGCTGCCCAACCTACACAACCAAACTCGC CATCGCCATCACCATCGCCATCATTCAAACTAACCTCCAAGTGGATTGTTCGATCCCACGACGACGACTACGACTTCGACGAAGATTACCACTACGATGT CGTCGACACGGTGCCCCCATTGGATTTCGAAAACGCTAGGCTAGAAACAGCCTATTTCGCCCTTCAAACATGGAAGCATGCCATCCTTTCGGACCCTTAC AACAGAACCGCCAATTGGATGGGCTCCGATGTTTGCAACTACACTGGCATTTTCTGCTGGCCCGCCCCTGACGATGCCTCTGTCGTCACCGTCGCAGGTA TCGACCTCAACCATGCCAACATCGCCGGTCAATTGGTAAACGAGCTCGGCCTCCTCACTGATTTAGCGCTGATTCACCTCAACACCAACAGATTCTGCGG CACCGTTCCCAAGACCTTCAAGAAGCTGAAAATTCTCCACGAGCTAGACCTCAGCAACAACCGATTCGCTGGGAAATTCCCTTACTCTGTTCTCGAAATC CCCAAGCTCAAGTACCTGGACATCCGGTTCAACGAATTCGAAGGCCGGATCCCTAAGAGGCTTTTCGACAAAGACCTCGACGCCATTTTCATCAACCACA ACAACTTCGCCTCCCACCTCCCGGAGAATATTGGTAATTCCCCTGCCTCGGTCATGGTACTCGCCGGGAATAAGTTCCACGGCTGCCTTCCGCCGAGCTT CCGGAACATGTCGGCGACGCTCAATGAGGTGATCTTTACGGACAACGGGCTGCGGGCGTGTCTGCCGGAGGAGATCGGTTCGCTGAAGAACCTGACGGTT TTCGACGCCAGTAATAACAGGTTCGTGGGGCCCATCCCGGACTCGTTTGGCGAGCTGGAGAATTTGGAGGTTTTGAATTTGGGGCACAATATGTTGACCG GGGAGATTCCCGAGGCGATCTGCTCGCTCCCTAAGCTGTGGAATTTCACGGCGTCGTCCAACTTCTTTGACGAGGAGGCCCCCGAGTGCCGGGGTTTGGA GGAGTTCAATGATGGACGGAATTGTTTAAAGGATCGGCGAAATCAGCGATCGCGGTGGCAGTGTGAGATGTTTGAGTCCAGGCCTAAGGTTAGGTGTGAG GATCACCAGTGTTTTAAGCCGCCGCAGCCATGTGAGGCTATTTCCCCTCCACCTCCGCCTCCGCCTCCGGTTCCTTGCGCAGATGATAACTCGACTAGTA CGGAGGATGATGTATCTCAGATTCAGGCTCCGCCGAGGCGGTTGTTGTCTCGACCGTAA
AA sequence Show only first row Show all	>Lus10037905 pacid=23163865 polypeptide=Lus10037905 locus=Lus10037905.g ID=Lus10037905.BGIv1.0 annot-version=v1.0 MRVKHTISIVIVLILLPSFQLFIAAAQPTQPNSPSPSPSPSFKLTSKWIVRSHDDDYDFDEDYHYDVVDTVPPLDFENARLETAYFALQTWKHAILSDPY NRTANWMGSDVCNYTGIFCWPAPDDASVVTVAGIDLNHANIAGQLVNELGLLTDLALIHLNTNRFCGTVPKTFKKLKILHELDLSNNRFAGKFPYSVLEI PKLKYLDIRFNEFEGRIPKRLFDKDLDAIFINHNNFASHLPENIGNSPASVMVLAGNKFHGCLPPSFRNMSATLNEVIFTDNGLRACLPEEIGSLKNLTV FDASNNRFVGPIPDSFGELENLEVLNLGHNMLTGEIPEAICSLPKLWNFTASSNFFDEEAPECRGLEEFNDGRNCLKDRRNQRSRWQCEMFESRPKVRCE DHQCFKPPQPCEAISPPPPPPPPVPCADDNSTSTEDDVSQIQAPPRRLLSRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10037905 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027354 [exp]	2.4	0.8354
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	2.8	0.8255
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	4.2	0.8207
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	16.7	0.7719
					Lus10019560 [exp]	17.5	0.7502
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	21.3	0.7867
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	22.7	0.7774
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	25.1	0.7304
					Lus10009774 [exp]	36.2	0.7327
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	36.4	0.7774

Compare expression of checked genes

Lus10037905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.