Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06330 231 / 5e-71 RING/U-box superfamily protein (.1.2.3) AT5G18760 191 / 8e-56 RING/U-box superfamily protein (.1) AT3G09760 145 / 4e-38 RING/U-box superfamily protein (.1) AT5G60580 135 / 6e-35 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 132 / 1e-33 RING/U-box superfamily protein (.1.2) AT4G34100 57 / 2e-08 RING/U-box superfamily protein (.1.2) AT5G38070 55 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G08750 56 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT2G37950 54 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 54 / 7e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038632 [exp] 624 / 0 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012791 [exp] 369 / 2e-124 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 365 / 2e-118 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10021482 [exp] 144 / 4e-38 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10037410 [exp] 144 / 1e-37 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10012793 [exp] 137 / 1e-37 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3) Lus10022585 [exp] 142 / 3e-37 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 143 / 2e-36 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10026501 [exp] 136 / 9e-35 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014950 [exp] 298 / 5e-97 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 296 / 3e-96 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 287 / 9e-93 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.016G022900 [exp] 149 / 1e-39 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 145 / 3e-38 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 145 / 3e-38 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 139 / 4e-36 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G304100 [exp] 57 / 1e-08 AT4G34100 1553 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G099400 [exp] 57 / 2e-08 AT4G34100 1607 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G246700 [exp] 54 / 2e-08 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10037906 pacid=23163821 polypeptide=Lus10037906 locus=Lus10037906.g ID=Lus10037906.BGIv1.0 annot-version=v1.0 ATGCAACCTGCTCATTCTCAGCCGTTAGTCTGCAATGGCGCAGCTGCACATTCAGACGCTACTTCTTCTTGTTCTTCTTCTTCACAGGCTGATTTGGAAA ACGGGAGACAATGTGGTGATGAGGTTAGAAGAACAGGACCAAGGACTGATCTTTCTCTTCAAATACCGGCTAGACAAGTGAATTCAGGAGCCAGGGGCAA TGGCAAAGGATTAATGAAATCTCAAACAACATTCAGACGGCTTCAGCGGGCATTAAGCTTCAAGAAGAGAAATGGTGAGAGGATTTGTCTGCTCAACTCA GGCAACTACTCACAACCTTCTCCAGTTAGTCCGATGATCATAGCCAATCTCAAGTCTGCATTTTCCAGATGCATCTCACTTCCACCTGCATTACCTTGGT CACCCAACGCCCTACTTCCCACAAGGTCCGACTCAGCTCGATTGCCTGACCAATTTCATGAAATGGAGGCAGCTGCAGTTTCAAGGTCTCTATCTGCTCC TGAGCGAAACGTTGTCATCGTGAGGTCTGCATCTTTCGCGGCTCCTAGACACAAGCCCTATGATGTTGATGCTGCAATTCATAATGAACAACCATTCCCT GATGTGGCATTTACTTGTAAAACTCTTTATGAGAGTTTTAACTGCAAGATAAGGAATGAATCCTACCCTGTAAATAAGACAAGGTCGTCGTGTTTATGTG ACAAAGCAGCTCAAATATCTATAGATGAGAATGAAGAGAATGAGGATGAAGAAATCCCAGAAGAGGAGGCAGTATGCAGGATCTGTCTTGATGCATGTGA AGAAGAAAACACACTCAAAATGGAATGCGGGTGCAGAGGGGACCTCAGACTGGTACATGAATCATGTGCAGTTAAGTGGTTTAGCACAAAAGGAAACAGA ACCTGTGAAGTGTGTCGTCAAGAAGTTAACAACTTGCCCGTGATCTTATTTCGAGTAACTAGTTATGCCCAATTCAGTGAAAGACAGTCACCAGGTGGAC AGAGCTTCAGGGCACAACAAATAAGTGCCTGGCAGGACTTTGTTGTGCTGATCCTGATTAGCACAATATGCTATTTCTTCTTCCTGGAGCAATTATTGAT TGATGACATGAAGACGGGCAATCGTAGTTGCAGCACCATTTGCATTGGCCTTAGGCGTTATGGCATCGATCTTTGCGGCCATGCTAAGTACACAATGAAC TTGATTAGTCAAAACATTGACGATTCACTTGATTTGGATGCGATATACGCAATACTGGTAGCAGCAGTATTGGGGTTTGGAATAGCTATGAGCCTCAATT CATTGTACATTCAGTACTTCATCTGGCGAGCTCAAAACTCCACCTTCACTGCTCCCCCTGTCTGA
AA sequence Show only first row Show all	>Lus10037906 pacid=23163821 polypeptide=Lus10037906 locus=Lus10037906.g ID=Lus10037906.BGIv1.0 annot-version=v1.0 MQPAHSQPLVCNGAAAHSDATSSCSSSSQADLENGRQCGDEVRRTGPRTDLSLQIPARQVNSGARGNGKGLMKSQTTFRRLQRALSFKKRNGERICLLNS GNYSQPSPVSPMIIANLKSAFSRCISLPPALPWSPNALLPTRSDSARLPDQFHEMEAAAVSRSLSAPERNVVIVRSASFAAPRHKPYDVDAAIHNEQPFP DVAFTCKTLYESFNCKIRNESYPVNKTRSSCLCDKAAQISIDENEENEDEEIPEEEAVCRICLDACEEENTLKMECGCRGDLRLVHESCAVKWFSTKGNR TCEVCRQEVNNLPVILFRVTSYAQFSERQSPGGQSFRAQQISAWQDFVVLILISTICYFFFLEQLLIDDMKTGNRSCSTICIGLRRYGIDLCGHAKYTMN LISQNIDDSLDLDAIYAILVAAVLGFGIAMSLNSLYIQYFIWRAQNSTFTAPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06330			RING/U-box superfamily protein...		Lus10037906 [exp]	0	1
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	9.3	0.8100
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	34.2	0.7712
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	34.3	0.7692
AT5G18590			Galactose oxidase/kelch repeat...		Lus10034163 [exp]	35.0	0.7502
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	38.6	0.7717
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	45.9	0.7704
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	47.6	0.7624
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	57.0	0.7612
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	60.3	0.6857
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	64.2	0.7527

Compare expression of checked genes

Lus10037906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.