Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21480 323 / 2e-94 BRCT domain-containing DNA repair protein (.1) AT4G03130 219 / 8e-60 BRCT domain-containing DNA repair protein (.1) AT2G41450 59 / 2e-08 N-acetyltransferases;N-acetyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038633 [exp] 1808 / 0 AT3G21480 317 / 5e-92 BRCT domain-containing DNA repair protein (.1) Lus10033984 [exp] 560 / 0 AT3G21480 301 / 3e-86 BRCT domain-containing DNA repair protein (.1) Lus10012794 [exp] 228 / 2e-67 ND / Lus10012790 [exp] 178 / 1e-48 AT3G21480 112 / 1e-26 BRCT domain-containing DNA repair protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014700 [exp] 401 / 6e-122 AT3G21480 366 / 4e-109 BRCT domain-containing DNA repair protein (.1) Potri.014G135520 [exp] 270 / 3e-76 AT4G03130 284 / 2e-83 BRCT domain-containing DNA repair protein (.1) Potri.006G045100 [exp] 72 / 1e-12 AT2G41450 487 / 2e-167 N-acetyltransferases;N-acetyltransferases (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037907 pacid=23163807 polypeptide=Lus10037907 locus=Lus10037907.g ID=Lus10037907.BGIv1.0 annot-version=v1.0 ATGGTCTCTACTGCAGACGACGGTGGCGGTGCGGTTCGACCAGTGGAGGACAACTCAGCAGCCGCCGACACTCAGCCTTTCAATTCAGATTGGTTTGCGT CTTCCTCGCCAGGAGAAAATGTTGGATATGATGATGACGTCTTCGTGGATACGAGAAAGGTTTCCTTTGATGATACTGTTCCAGTTGAAGATATATTTGA GACCCAAGTAGTGAACTACGGGGAAGAAACACAAGCTCCGGATGATCTAGATTTCGTTGGAAGTATGGCCACACAGATGATTGATGAGTTCAGTGAGCAT GTGGTTCTTGATAGTGAGGGTGAATGTAGTGACACTACAGAAATTTTGGGTACCGGTGATGAGGTTTCGGATGATGATGGTGAAGCATTAGCAGAGGTCG AGGGTCAGTTCCCTTCTTATGATAATTCCAAAGATGAGCAGTCTGTGGATCAAACAAATGCTTCCTCCAACCCTCAAAGCAATTCAGGATTGGTCCCACG ATTCACTTCAGTTCGAATAAAAGCACTGCGTTCTTCTGCTTTAGTAGCTCAGGGAAATGCCCTGGAGGATTCCGGAAATGGTTTTTGTTCAAACCTGAAC TGCAGTCATTCCACAGAGCAACTAACTTCTTGTGATGAAATAGTTAAGGATTCTAACGCAGGGGAAAACATTGACAAAGAGAAGGAGCCGGATTGCGGGA TCAGGTCCAAGGTTAATTCTTCAACAGTAAGAAGGCTGTTTACTGTTGATTCAATTTCTAAAGATGTTGATATCAGTCATACTAGTAGCATAACTGGAGC AAAAGAAATCATCCAGCCACTCACTGTTAATGAGGAGTTGGCAGGGTTGAGTTATGTAGACTTGCAAGAGCCTGGTGATGCTTCACAAGCTGATGCACTT GCATTTGTGGAAAGGTTAATTGACGAGACTAAAACCTCATTTGATGACGAGTTGAGTCTTGGAAGCTGTGGCGGTAGAAAATTCAGTTGTATACCAACTG CAAAAGGTCCTCAAAGTTTGGCCAAGAAAACCATCAAACGGAGCATTGGTGGTACAACTGGAATTTTTGACTGGGATGACAGACTGGAGGATGAGGGAGG CGGAGATATATTCATAAGAAGAAAGGACGACTTTTTGGGTGTAAAAGAACCTGGCAAGTCTTTCACAGATCCCCTGAAAAGCAGATCAAACATGCGGACG GTATGCAGAGGCAATAAAAAAAAGTTGGAAGGCGCAATACACTCTGATTCCAAAGTAGTGGTTCGGAAGTTCAAGGTAAATGAGAATAAAAAAGAGGGAA CTTTGAGGAATACCAGAAAAGACCTTCTTGATGGCTTTCATGAACAGGCTAATAGGAATCTCACCGAACCAACAGGACAGCCTGAAGTAGCTGTTGCTCC AGAAAATTGTGATGTAGGCTTGGACACCCAGTTAGCTGCTGATGCCGTGGAAATTTTACTAAATGCGGACCCTCTTTCTGACCATGATGGCAGTGATGCG AAGGAAAAGCACTATGCGCTACAATATCCAACAAGAAAATCTAAAAGGACAGCGTCTTCAAAGCTATGTGCTTCTGATGACAGTGATGACAGTGGAGTGA ACACTAGGCAATTGAAGAAAAGGAAGAATGATGTTATTAAAGCTGTCCAGACGAGTGTCTCTTCTCCTAAACAATCCAACAAGGTTGTCTTGGAGCGTGA TGCAGGTCCGGTACTGATGACGAGGAGGAGAGTGATATCTGATGGTGTTGAACTATCAATATCTCGTGGCAAAAAATCCATAGGGATGGTGAGGAGGGTG AGGCCAGATGCAGATGAATACTCTATTCCTCATGACCAGAAAACCCTGAAAGTGCTTCCATCCAAGACAAGTGAGCCAAAATATAGAGAGGCAACTCTGG GTCTCCAACTTGATTCGTCAAACAACTGTAAAGTGCCTTCTTTAAGAAGAGGACGGTCAGCTAAGAGAAAGTCGTCACCTGAGGAGGTTGCCGTTCATAC AACAATAGCTCGCCGTACAAGAAAATCCTTTGTGGTTTCTCCTTTGGTTGGGAATGAACCTGCTGAAGTCGATGAACACAAGGACCATACAAAGGATGAG AATGGGCTTGACCAGAGTCGAGCTGACACAGTTGACGAGGAGACTGTTGAAGCCTCAAATGCTGTACGGCTGACTTCCAGTAAATCTGAAAAGCCAGTGC CTGTAACACCAGAGAAGATGTTGAAGGGAGTAATCGAAGCGTCCATTTCAGCTTCTACTTCACCAGTTGGCTCTGTGACTACAAATGCTGCATCGCCTGT TTGTATTGGTAACGGATTGGGCAAGAACAACCTTGCCACAACTTCTCTGAGGGAGATTAATAACCTATGCAGCATAGACCTAGAACCTATTCCTGAGGTG AAAGACTCAAGAAAGAGGAGAAATTTGACTGATGTCCGGGTCATATTCAGCCGCCACCTGAAGGAGGATGTTTTTAAGCGTCAGAAAAAGCTTTTGGACC GTTTAAAAGTCTCAATGGCTTCCTCTATTCTGGACGCAACACATTTTGTTACAGATAAGTTTGTTCGAACAAGGAATATGTTGGAAGCAATTGCTGCTGG AAAGCCAGTAGTAACACCCTTGTGGCTTGAGCATGTTGCACGAGCCAATTACTACATTGATGAGCAGAAATACATACTAAGGGATGCAAAAAAGGAAAAG GAGATAGGATTCAACATGGAAGTTTCATTAGCACATGCACGCCAGTATGCGCTCCTTCAGGGCCGAAAAGTTTTGATCACCCAAAATGCAAAGCCCAGTA AAGAAATCTTATTTAGTCTGGTTAAAGCAGTTCATGGTGAACCAATTGAGAGAGTGGGTAGATCTGCTCTGAAGGATGATTCATTAATCAAAGACCTGTT GGTTTTATCTTGTGATGAAGATTATGAAGTCTGCGTTCCTTTGCTCGAAAGAGGGGCCGCTGCACACGTTTCAGAACTGCTACTGAATGGAATCGTTACA CGGAAGCTAGAATACGACAGGCATAGGCTGTTTTCGGATCATGTGAAGAGGACCCGGTCGACTATACGGCTAAGAAAAGATGGGGAAAAGAATTTCACTC CTGTTGTGAAGAACAAGTAA
AA sequence Show only first row Show all	>Lus10037907 pacid=23163807 polypeptide=Lus10037907 locus=Lus10037907.g ID=Lus10037907.BGIv1.0 annot-version=v1.0 MVSTADDGGGAVRPVEDNSAAADTQPFNSDWFASSSPGENVGYDDDVFVDTRKVSFDDTVPVEDIFETQVVNYGEETQAPDDLDFVGSMATQMIDEFSEH VVLDSEGECSDTTEILGTGDEVSDDDGEALAEVEGQFPSYDNSKDEQSVDQTNASSNPQSNSGLVPRFTSVRIKALRSSALVAQGNALEDSGNGFCSNLN CSHSTEQLTSCDEIVKDSNAGENIDKEKEPDCGIRSKVNSSTVRRLFTVDSISKDVDISHTSSITGAKEIIQPLTVNEELAGLSYVDLQEPGDASQADAL AFVERLIDETKTSFDDELSLGSCGGRKFSCIPTAKGPQSLAKKTIKRSIGGTTGIFDWDDRLEDEGGGDIFIRRKDDFLGVKEPGKSFTDPLKSRSNMRT VCRGNKKKLEGAIHSDSKVVVRKFKVNENKKEGTLRNTRKDLLDGFHEQANRNLTEPTGQPEVAVAPENCDVGLDTQLAADAVEILLNADPLSDHDGSDA KEKHYALQYPTRKSKRTASSKLCASDDSDDSGVNTRQLKKRKNDVIKAVQTSVSSPKQSNKVVLERDAGPVLMTRRRVISDGVELSISRGKKSIGMVRRV RPDADEYSIPHDQKTLKVLPSKTSEPKYREATLGLQLDSSNNCKVPSLRRGRSAKRKSSPEEVAVHTTIARRTRKSFVVSPLVGNEPAEVDEHKDHTKDE NGLDQSRADTVDEETVEASNAVRLTSSKSEKPVPVTPEKMLKGVIEASISASTSPVGSVTTNAASPVCIGNGLGKNNLATTSLREINNLCSIDLEPIPEV KDSRKRRNLTDVRVIFSRHLKEDVFKRQKKLLDRLKVSMASSILDATHFVTDKFVRTRNMLEAIAAGKPVVTPLWLEHVARANYYIDEQKYILRDAKKEK EIGFNMEVSLAHARQYALLQGRKVLITQNAKPSKEILFSLVKAVHGEPIERVGRSALKDDSLIKDLLVLSCDEDYEVCVPLLERGAAAHVSELLLNGIVT RKLEYDRHRLFSDHVKRTRSTIRLRKDGEKNFTPVVKNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	0	1
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10041325 [exp]	1.0	0.9208
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	1.4	0.9073
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	2.0	0.8936
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10019894 [exp]	3.2	0.8715
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	4.6	0.8831
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	5.5	0.8874
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	6.0	0.8695
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	7.7	0.9039
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	9.2	0.8625
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	11.2	0.8412

Compare expression of checked genes

Lus10037907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.