Plant FIBer expression Database

Lus10037909 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000805
[exp]
65 / 3e-13 AT1G27220 40 / 7e-05 paired amphipathic helix repeat-containing protein (.1)
Lus10004639
[exp]
57 / 3e-09 AT1G69160 55 / 4e-08 unknown protein
Lus10005297
[exp]
45 / 2e-06 ND 40 / 5e-05
Lus10027494
[exp]
44 / 4e-06 ND 34 / 0.006
Lus10026940
[exp]
44 / 6e-05 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
Lus10009101
[exp]
39 / 0.0005 ND 35 / 0.003
Lus10004409
[exp]
39 / 0.0007 ND 39 / 5e-04
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10037909 pacid=23163709 polypeptide=Lus10037909 locus=Lus10037909.g ID=Lus10037909.BGIv1.0 annot-version=v1.0
ATGTCCCGAACCCATTTCATGCTCTCAGCCAATGCTTCTGCCTCTTCCTCTCGCACATCTGCATGGCCGCTACTCTTTTGCTCCCGGTCTCGTTGTGAGC
CACCATCTCCACTCATGGCTATCCTCCATCGAGAACATTTCAATGTCAATATTGCACTTTTAGAAAACCGGATGGTGTTGTTAACAAGGCTGGCTAGAAG
CGGAAAAACTAATGGTGTTGGCACTTCATCTTCTCATATAGCTGCTCCATCTTGGACTTCAGCTCGGTCCTCTTCCTATCCTACTGCTGCTCCAGCTCCA
GCTCGACCTTCTACCACAGATGCACCACTAGTTCCAGATATTCCGCCTCCTGCTGACATTGCTTCTTACCCTCCCATGCTGGCAGATCAGATACACTGTG
CCACATGGTACAATGTTGACATTGCAATTTTCTCGGAGGATTGCCACCAATGGAGATGGTGGCTCGCGACGAGCCAGAAGCAAAAGAGTAGCGGCCATGC
AGATGTGAAAGAGGAAGAGGCAGAAGCATTGGTTGAGAGCATGGAATGGGTTCGGGACATGGAGTATGAGCTTAAAATCTTTGAAACCGACAGTCAAATT
ATCGTGTTAGCGATCAAAACCAAAACAACGGATCATACAGAATTCGGCCCATCGGCAAATGATTGCCAAGCCATTCATTTGGGGAGCCCTCCCTTTGAGA
TTGCGTGGATTAGGAGAAGTCGGGATGTGGTAGGGCAAACAAGCTCGTAG
AA sequence
>Lus10037909 pacid=23163709 polypeptide=Lus10037909 locus=Lus10037909.g ID=Lus10037909.BGIv1.0 annot-version=v1.0
MSRTHFMLSANASASSSRTSAWPLLFCSRSRCEPPSPLMAILHREHFNVNIALLENRMVLLTRLARSGKTNGVGTSSSHIAAPSWTSARSSSYPTAAPAP
ARPSTTDAPLVPDIPPPADIASYPPMLADQIHCATWYNVDIAIFSEDCHQWRWWLATSQKQKSSGHADVKEEEAEALVESMEWVRDMEYELKIFETDSQI
IVLAIKTKTTDHTEFGPSANDCQAIHLGSPPFEIAWIRRSRDVVGQTSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10037909
[exp]
0 1
Lus10027106
[exp]
2.0 0.7304
AT1G01950 AtKINUb, ARK2 Arabidopsis thaliana KINESIN U... Lus10037965
[exp]
10.7 0.6783
Lus10001193
[exp]
12.4 0.6429
AT3G27470 Protein of unknown function (D... Lus10035228
[exp]
18.4 0.6738
Lus10003753
[exp]
18.8 0.6638
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10000682
[exp]
20.3 0.6638
AT4G20040 Pectin lyase-like superfamily ... Lus10008700
[exp]
21.7 0.6638
AT3G52970 CYP76G1 "cytochrome P450, family 76, s... Lus10032339
[exp]
23.0 0.6638
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Lus10024462
[exp]
25.7 0.6547
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Lus10010776
[exp]
45.2 0.6040

Lus10037909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.