Plant FIBer expression Database

Lus10037911 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39080 187 / 3e-59 EMB2799 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038637
[exp]
233 / 1e-77 AT2G39080 402 / 3e-141 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10033974
[exp]
226 / 1e-74 AT2G39080 413 / 3e-145 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10012806
[exp]
225 / 4e-74 AT2G39080 415 / 8e-146 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G204700
[exp]
204 / 6e-66 AT2G39080 462 / 3e-164 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10037911 pacid=23163688 polypeptide=Lus10037911 locus=Lus10037911.g ID=Lus10037911.BGIv1.0 annot-version=v1.0
ATGTCATCTTCTGTGCCCCTCCCTATAGAACTGCGGACTATCCTGGCGATGTCAGGATTTTCGCTAACCAGGGAAGCTGCTCGGAGATGGAATGGAGAAG
GCTGTACTTCTAGCTCTGCACCTTATGATTGGAACGACAATGGTGAATGTGATGAGGACACTCCAGTTGTGCCAATTGGGAGAAACCTCAGAACCGACGT
CCTTCTAAATGCAGAAAAAGTAGTTCTGGAAAGTGAAGGAGCACATGTTTACTGGTTGGAGAAAGGGACATCTGACCTTCGCCCAGATCATATCCTTAAC
CTCATACACTACGAGGATGCTGCATCTCTCTGCATAACAATACTGAAAAAGAAACTCCGAGGCCAGATCTTCTTAGGTTGCAACAACCATCCACTCTCTA
GGCAGGAAATAATGGAGCTGGTTGCTAAAAGTGGGAAATTTAGCAAAAGGAACCAGCGATCCACTGGGTAA
AA sequence
>Lus10037911 pacid=23163688 polypeptide=Lus10037911 locus=Lus10037911.g ID=Lus10037911.BGIv1.0 annot-version=v1.0
MSSSVPLPIELRTILAMSGFSLTREAARRWNGEGCTSSSAPYDWNDNGECDEDTPVVPIGRNLRTDVLLNAEKVVLESEGAHVYWLEKGTSDLRPDHILN
LIHYEDAASLCITILKKKLRGQIFLGCNNHPLSRQEIMELVAKSGKFSKRNQRSTG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G39080 EMB2799 EMBRYO DEFECTIVE 2799, NAD(P)-... Lus10037911
[exp]
0 1
AT3G53180 NodGS nodulin/glutamine synthase-lik... Lus10023904
[exp]
2.0 0.9994
Lus10009632
[exp]
2.2 0.9992
AT4G11530 CRK34 cysteine-rich RLK (RECEPTOR-li... Lus10022285
[exp]
2.8 0.9994
Lus10000380
[exp]
3.5 0.9994
Lus10010383
[exp]
4.0 0.9994
AT3G06060 TSC10A TSC10A, NAD(P)-binding Rossman... Lus10039502
[exp]
4.2 0.9620
AT5G28210 mRNA capping enzyme family pro... Lus10040496
[exp]
4.5 0.9502
AT2G24280 alpha/beta-Hydrolases superfam... Lus10024449
[exp]
5.5 0.9849
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Lus10015092
[exp]
5.9 0.9813
AT3G06060 TSC10A TSC10A, NAD(P)-binding Rossman... Lus10039501
[exp]
6.9 0.9666

Lus10037911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.