Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18660 554 / 0 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 52 / 3e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35250 49 / 3e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 49 / 4e-06 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 42 / 0.0007 HCF173 high chlorophyll fluorescence phenotype 173 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038638 [exp] 769 / 0 AT5G18660 574 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 59 / 2e-09 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 55 / 4e-08 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 44 / 0.0002 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 44 / 0.0002 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204900 [exp] 612 / 0 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G143000 [exp] 53 / 2e-07 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 52 / 3e-07 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G183100 [exp] 52 / 3e-07 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 46 / 5e-05 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 46 / 5e-05 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G000400 [exp] 44 / 0.0002 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.007G003500 [exp] 44 / 0.0002 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.004G150300 [exp] 43 / 0.0003 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G036500 [exp] 43 / 0.0003 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10037912 pacid=23163750 polypeptide=Lus10037912 locus=Lus10037912.g ID=Lus10037912.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCTTTCTCCTCAAATGTTTTCAATCTCCATCCCTGCAAGTCCTACAGACCTCCAATTTTGCCTTCCCACCTCAACAATGCAACTCTCCAGG TACATTACCTAAGCCATTCTTTACCATCGTCACTTATGAACCGGTCCCAGCCGCTTAGAAAAAGACCCAATCTTCGCATTACAGCTTCCATCACTACGGA TGATGATCAACAAGTTGAAGCTTCTTCATTCAGGACCAAGAAGAACCCTAAAGACATCAACGTGTTGGTTGTGGGTTCGACTGGCTACATAGGGAAATTC GTAGCCAAAGAGTTGGTGAGTCGAGGGTTTAACGTGATAGCCATAGCTAGAGAAAAGAGTGGAATTAGAGGTCAAAAGAGTAAAGACGATACCCTAAACG AATTGAGGGGAGCTAATGTGTGTTTTTCTAATGTGACCCATTTGGAGACATTGGAGAGGTCGCTGGACGATTTGGGGATTCCGATTGATGTAGTGGTTTC GTGTCTCGCAAGTCGGACAGGAGGGGTGAAGGATTCGTGGAAAATCGATTACGAGGCTACCAAGAACAGTCTTTTGGCAGGAAGGAAAAGAGGGGCTAAG CATTTTGTTTTGTTGTCAGCAATCTGTGTGCAAAAGCCGCTCCTCGAATTCCAGCGGGCAAAACTGAAATTTGAGGAGGAGTTGATTAAGGAAGCAGAAG AAGGAGATGGAGGGTTCAGTTACAGCATTGTGAGGCCTACTGCCTTCTTCAAAAGTTTAGGGGGGCAAGTTGATTTGGTTAAGGAAGGGAAACCATATGT GATGTTTGGGGATGGAAGATTGTGTGCTTGCAAACCAATAAGTGAGCAGGATTTGGCTGCTTTTATGGCAGATTGTGTTCTGGATGAGGATAAGATCAAT CAGGTCCTGCCAATCGGTGGACCGGGGAAGGCACTGACACCATTGGAGCAAGGGGAGATGTTGTTTAGATTGGTGGGTAAGGAACCAAAGTTCTTGAAGG TCCCTATTGGGATAATGGACTTTGCAATTGGGGTGCTTGATTTCCTGGTTAAGATATTCCCTGGAATGGAGGATGCTGCTGAGTTTGGCAAGATTGGGAG GTATTATGCAGCAGAGAGCATGCTTGTTTTGGATCCTGAAACTGGTGAGTACAGTGCTGACAAGACTCCTAGCTATGGGAGGGATACTCTTGAAGGGTTT TTCCAGAGAGTACTCAGTGAAGGAATGGCTGGTCAGGAACTAGGTGAACAATCTATATTCTGA
AA sequence Show only first row Show all	>Lus10037912 pacid=23163750 polypeptide=Lus10037912 locus=Lus10037912.g ID=Lus10037912.BGIv1.0 annot-version=v1.0 MALSFSSNVFNLHPCKSYRPPILPSHLNNATLQVHYLSHSLPSSLMNRSQPLRKRPNLRITASITTDDDQQVEASSFRTKKNPKDINVLVVGSTGYIGKF VAKELVSRGFNVIAIAREKSGIRGQKSKDDTLNELRGANVCFSNVTHLETLERSLDDLGIPIDVVVSCLASRTGGVKDSWKIDYEATKNSLLAGRKRGAK HFVLLSAICVQKPLLEFQRAKLKFEEELIKEAEEGDGGFSYSIVRPTAFFKSLGGQVDLVKEGKPYVMFGDGRLCACKPISEQDLAAFMADCVLDEDKIN QVLPIGGPGKALTPLEQGEMLFRLVGKEPKFLKVPIGIMDFAIGVLDFLVKIFPGMEDAAEFGKIGRYYAAESMLVLDPETGEYSADKTPSYGRDTLEGF FQRVLSEGMAGQELGEQSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10037912 [exp]	0	1
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	1.0	0.9676
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	2.0	0.9574
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	3.9	0.9387
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	6.3	0.9385
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	7.0	0.9142
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	7.5	0.9140
AT3G61870			unknown protein		Lus10012617 [exp]	8.1	0.9307
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024807 [exp]	8.9	0.8505
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	14.7	0.9135
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	14.8	0.9106

Compare expression of checked genes

Lus10037912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.