Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10550 967 / 0 MTM1, AtMTM1 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1) AT5G04540 936 / 0 Myotubularin-like phosphatases II superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038641 [exp] 1506 / 0 AT3G10550 1133 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233600 [exp] 1128 / 0 AT3G10550 1077 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1) Potri.008G026900 [exp] 1123 / 0 AT3G10550 1082 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF06602 [flax] [poplar] Myotub-related Myotubularin-like phosphatase domain
Representative CDS sequence Show only first row Show all	>Lus10037915 pacid=23163692 polypeptide=Lus10037915 locus=Lus10037915.g ID=Lus10037915.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCCAGGACGCGACGATCGGCGTCCTACAGGGGGGACGCCTCTTCCGATTCCGAGAAGATGGAGTCCTCCGCCGGCTGGGACGACGCTCTCG ATTGGCTCAAGCTTGACGAGTCCAACCAGCCATCGGTGGTCTCCCGCTCCGTTTCCTTCTCCCATCATCACCCCAATTACAAGTGTCTTCTTGAACGAGA ACGAGTCTTAGCTGAGCAGTACCATCAGGGTGTGAAGAATCAATCAGCTCCACGTCAATCTGAAAAGACTGCATCAAGACGACTCCTCCAGGTTATTGGG AAAGATATGAGAATTGTTGTCTTTGGTTTTCGCCCGAGAACAAAGCAGAGGCGTGCCATATATATTGCCTTGCAGAGAAGTTCAAAGCCTCTAAGAATCT GGGATCTTTTTGCATTTTCCTCTGGAACTTCAAACTTCGGTAACACAAATCCAAAAGTGAGGCTGCTAAATGAATATTTTCGCCTTCTTGGAAAAGGTTC TTATGGTGCCTCAATGAATATGATTGAGAAGGAGTCATATATGGTATCTAATGCGCTGTGGCGGATCAGTAATGTGAATTCCAGCTATTCAATGTGCCAA ACTTACCCATTTGCCTTGGTCCTGCCAAATTCCGTCAGTGATGAGGAGGTGATCCAAGCATCCACCTTTCGTGCTAGGGGTCGCTTGCCTGTAATTTCAT GGTGTCATCCAGTCACTGGAGCTGTCCTTGCCCGTTCATCACAGCCTTTAGTTGGTCTTATGATGAATTTGAGGAGCAATGCCGATGAGAAGCTTGTTGC TGCTCTATGCACTCAGTCTGGTGGAGCTCGAGGGAGGAGGAAATTATACATTGCTGATGCACGTCCAAGAAAAAATGCTTTAGCCAATGGGGCAATGGGT GGTGGCTCAGAGTCGTCATCTAATTATTTTCAGTCTGAGGTAGTATTTTTGGGGATTGACAACATACATGCAATGAGGGAGAGCCTTTCTCGATTGCGAG ACTACCTGGATACTCATGGCACTACATCATCAGATGGGATGTCTTCTTTTCTGAGACATGGTGGTTGGACGTGGGGTGGTGGCAATCTCAGCAGCATGTC TGCTTCTGTATCCGCCTTTGGGGACACTGGTTGGCTGACACATGTCCAGAGTGTCTTGACTGGTGCAGCCTGGATTGCTGGACATGTCGCTTTAGAATCA GCATCTGTTCTTGTACATTGCAGTGATGGATGGGATAGAACTACCCAGCTGGTTGCACTTGCTAATTTATTGCTTGATCCATACTATCGAACATTTGCTG GGTTTCAGGCACTTGTTGAGAAGGATTGGCTTGCATTTGGTCATCCGTTCGCAGATCGTATGGGAATTCCAACTGTATCTGGAAGCAGCAAGATGCCTTT TGAATTAACACGACAAGCTTCTGTTGGGAGTTTTCCACCATCACCTGGCCATCAATCAGTTGGATCAACTGCGACTCCTAGTGCTTCTCATGCACAGAAC AACTGTTCTCCAATATTTTCACAGTGGGTCGACTGTGTGTCGCAATTACTGCGGATATATCCTTTCGCTTTTGAGTTCTCCTCGGCTTTCCTTGTAGATT TATTGGACTGCATGATGTCATGCCGTTTTGGGAACTTCTTCTGTAATAGTGAAAGGGAAAGGCAGCAAATTGGTGTCGCTGAAGCTTGTGGGTGCATGTG GGCTTATTTGGCCGATATACGTTCGTCAAAAGGAAGGTCTCATAGTCACTTCAACTTATTTTATGATCCACTGAAACGCGATGGTCCCTTATTACCCCCA GCAGCAGCTTTGGCTCCTACCTTATGGCCTCAGTTCCATCTTCGATGGGCTTGCCCATCTGAAGCACAAGCTGGTGAGCTTGAAGATCAATGCAGAGAAA TGTCTCTTAGATTTAATGACCTACAGAAGGCAAAAGATGTAGCAGAGAAGAAAGCTGCAGAAATGACTAGTGCCTTTGAATCATTGTCGGTGGAATTAAG GCATGAGAAGCAGCTGAGTAGCTCAGCAATGGCTTTGGCCAAAAGATCGAGCAAGGAAAGTGCTGCAATTAAGCGTGCCATACAGTCCTTGGGATGCAAT GTTCATTTTGCTAGTGGCAGCGACATCGAGAGCAGCCCTTTGAATAATGCACAACATAGGTTAACAAGTTCTCATACGCAACGAGATTCAGATGGTATTA CTGTGCACCAGAATGACCCGTCAGATGTTTCAGTTTCAATATCGGTCGTGGCCGATGAAAATGTTTCTGCAAGCAATCCCATTACTCAAATGTGTGAAAG TGTGTGCCCATTACGTACTCGAGAGGGAGGATGCAAGTGGCCAGATGCTGGTTGCGCTCAGCTAGGCAGTCAGTTCCTTGGACTAAAGGCAAACTACGAT GCCTTCGACAGGCTTTCTATATACGATAGTTATTTCCAAACAGATTGA
AA sequence Show only first row Show all	>Lus10037915 pacid=23163692 polypeptide=Lus10037915 locus=Lus10037915.g ID=Lus10037915.BGIv1.0 annot-version=v1.0 MAASRTRRSASYRGDASSDSEKMESSAGWDDALDWLKLDESNQPSVVSRSVSFSHHHPNYKCLLERERVLAEQYHQGVKNQSAPRQSEKTASRRLLQVIG KDMRIVVFGFRPRTKQRRAIYIALQRSSKPLRIWDLFAFSSGTSNFGNTNPKVRLLNEYFRLLGKGSYGASMNMIEKESYMVSNALWRISNVNSSYSMCQ TYPFALVLPNSVSDEEVIQASTFRARGRLPVISWCHPVTGAVLARSSQPLVGLMMNLRSNADEKLVAALCTQSGGARGRRKLYIADARPRKNALANGAMG GGSESSSNYFQSEVVFLGIDNIHAMRESLSRLRDYLDTHGTTSSDGMSSFLRHGGWTWGGGNLSSMSASVSAFGDTGWLTHVQSVLTGAAWIAGHVALES ASVLVHCSDGWDRTTQLVALANLLLDPYYRTFAGFQALVEKDWLAFGHPFADRMGIPTVSGSSKMPFELTRQASVGSFPPSPGHQSVGSTATPSASHAQN NCSPIFSQWVDCVSQLLRIYPFAFEFSSAFLVDLLDCMMSCRFGNFFCNSERERQQIGVAEACGCMWAYLADIRSSKGRSHSHFNLFYDPLKRDGPLLPP AAALAPTLWPQFHLRWACPSEAQAGELEDQCREMSLRFNDLQKAKDVAEKKAAEMTSAFESLSVELRHEKQLSSSAMALAKRSSKESAAIKRAIQSLGCN VHFASGSDIESSPLNNAQHRLTSSHTQRDSDGITVHQNDPSDVSVSISVVADENVSASNPITQMCESVCPLRTREGGCKWPDAGCAQLGSQFLGLKANYD AFDRLSIYDSYFQTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	0	1
AT5G22450			unknown protein		Lus10020607 [exp]	1.0	0.9087
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	2.8	0.8596
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	4.6	0.8639
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	4.9	0.8270
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	5.5	0.8471
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	6.6	0.8710
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	9.2	0.8396
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	9.8	0.8063
AT1G23230			unknown protein		Lus10016701 [exp]	10.5	0.8517
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	14.1	0.8251

Compare expression of checked genes

Lus10037915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.