Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52230 69 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038643 [exp] 219 / 4e-73 AT3G52230 75 / 6e-18 unknown protein Lus10028838 [exp] 136 / 3e-40 AT3G52230 77 / 3e-18 unknown protein Lus10017445 [exp] 62 / 2e-12 ND 34 / 0.009
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233400 [exp] 116 / 1e-32 AT3G52230 74 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037916 pacid=23163749 polypeptide=Lus10037916 locus=Lus10037916.g ID=Lus10037916.BGIv1.0 annot-version=v1.0 ATGGCGGACAACAACAAATCAATCATCACCATCGGTCCCTTTCCTTTCTTCCCTGATTTCCGATTTCAATTCCCTAATCCCCTCCACCGGAAGCCTCAGC CCAGCCACCGTATCGTCGCCTCCGATGACCGTACTGACGACAAACCTGATGCAGTCAAGTTCACGGAACGGAAACCCGCGCCGGCACCTCCTCTCCAGCT GGAAGTCGACGAGCCTTCCAATCCCCTCATCACTTACTCGGAAAATACTAAAAGAGAGGGACAGGGGGATTTAGGGTCAGAGAACTCTGAACTGAAGTCA TCGTTCGGCCTAACAATGGCGGCGGAGTGTGGAAAGATGGCGGTGGCTGAGAAAGATGAAGAAGGAGCTGGAGAGACCAAGTTGGGGCTGTTCTCGTTTC TTCCAAAGGTCAATTTACCAAACCCTTTCTTCAACCGAGCAGTAGAGACTGCTTCTTCGCCTTCTTCTGTTGGTGAAAGGGAGAAGGAAATTGAAGCTCC AAAACCTAATGTTGTGAGGTTTCCCAACGCTCGTCCGGTAGTTCCTCCTCCCATGGAGGTTGAGGTTGAAGAGAGTTCTCATAAAACTCACAATCCCATT ATTATTTGGCAGGTATATGCAATCGGAGGGTTTATAATTCTGAAGTGGGTATGGGCAAGATGGAATGAAAGGAAGGAGAGGGCGAAAAAGGGATCATCAT CAGAGGAGAATCGATCTCCAGAATACGAGTCACCTGGTGAAGGCGAGGATTAG
AA sequence Show only first row Show all	>Lus10037916 pacid=23163749 polypeptide=Lus10037916 locus=Lus10037916.g ID=Lus10037916.BGIv1.0 annot-version=v1.0 MADNNKSIITIGPFPFFPDFRFQFPNPLHRKPQPSHRIVASDDRTDDKPDAVKFTERKPAPAPPLQLEVDEPSNPLITYSENTKREGQGDLGSENSELKS SFGLTMAAECGKMAVAEKDEEGAGETKLGLFSFLPKVNLPNPFFNRAVETASSPSSVGEREKEIEAPKPNVVRFPNARPVVPPPMEVEVEESSHKTHNPI IIWQVYAIGGFIILKWVWARWNERKERAKKGSSSEENRSPEYESPGEGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52230			unknown protein		Lus10037916 [exp]	0	1
AT3G52230			unknown protein		Lus10038643 [exp]	1.7	0.8757
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	3.9	0.8157
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10000210 [exp]	5.1	0.8191
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	5.7	0.8264
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	8.9	0.8527
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	9.5	0.8472
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	9.6	0.8514
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	11.5	0.8381
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	15.3	0.8233
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	18.4	0.8114

Compare expression of checked genes

Lus10037916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.