Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52210 474 / 1e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT3G20650 89 / 7e-19 mRNA capping enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038644 [exp] 747 / 0 AT3G52210 477 / 3e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10000391 [exp] 99 / 1e-21 AT3G47040 270 / 1e-83 Glycosyl hydrolase family protein (.1.2) Lus10040205 [exp] 90 / 2e-21 ND / Lus10039638 [exp] 93 / 3e-21 ND 35 / 0.001 Lus10003803 [exp] 90 / 1e-18 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10010478 [exp] 87 / 1e-17 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10027014 [exp] 80 / 5e-16 AT5G49150 150 / 3e-40 gamete expressed 2 (.1) Lus10017746 [exp] 67 / 7e-13 ND / Lus10027333 [exp] 71 / 2e-12 AT3G20650 482 / 4e-169 mRNA capping enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233100 [exp] 542 / 0 AT3G52210 489 / 2e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.011G130100 [exp] 87 / 2e-18 AT3G20650 582 / 0.0 mRNA capping enzyme family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03291 [flax] [poplar] Pox_MCEL mRNA capping enzyme
Representative CDS sequence Show only first row Show all	>Lus10037917 pacid=23163751 polypeptide=Lus10037917 locus=Lus10037917.g ID=Lus10037917.BGIv1.0 annot-version=v1.0 ATGGCAGTTGGACGTTCTACATGGGTCCCGTCCAGTAGCACCAACGGGGATTGGTTGCTCACAGGTCCAACACTTGGTGGGCCACGAATCCTTATTGTGA TCCATAATTTTAGCGGTGACATAGCCCACCGCTTATGGACGTCCGGTTTGGACTTGAGGTCGACATCACAGTTCATGTTCCGCCTTGGGAAGCCTATGGT TTGTAAGCTGGAGAGGTTCCAGTGGCCTTCCGATGCGGCTCGACATTTCGTCGAGGCCTTTGGTTTTCCCACCTCGGAGGGGTTATGTGATGGGGGATGG ATCTTCCCTTACTGTTGGCGTTCCAAGACTCTGCAGGATTGGGAAGTTTTTCCTAAGGCTGACTGCTTTATTAATGACTATCTTGAAGTTCAAGGGAAGG AGCAATTGATGACTAGTCGACCGAAACCCAAGCGGAGGCTCTCTGCTCAATCGGAGACTGAAGAACACCTCCACCACCACTTGGAGACTGCGATTTCAGA GGGCAAATTCCTACCTTTCTACAGTGTAATGCTACCCTTCTCAGTTGGTCGGCCGGATTCGATTCACTACCGCCTTCATGAGTTCGCCAAGTTGGCCCTC GTTAACATCTTCGCCCACCCTTACGCCACCGTTTGCGATTTGTACTGCGGAGCTGGACTTGACGCCGAGATATGGGCCGGCACTCAAATCGGCCACTACA TTGGCATAGACGTGCCGGATTCTGGATTGCGTGAAATCAAAGAAGCTTTGGAGAGCCATAGGAAAGCCTACACTGCTGAATTCTTCGAGGCTGATCCTTG CTCGGAAAATTTTGAGGCTCAGTTGAAAGAGAAGGCTGGTCAGGCGGATTTGGTCTGCTGCTTACAGAATTTGCAGCTCTGTTTTGAAACTGAGGAGAGT GCAAGGAAACTGCTGCACAATGTGTCATATTTGCTTAAACCAGGGGGTTATTTTTTTGGTATTACTCCTGACTCATCTACCATATGGGCGAAGTACCAGA AGAATGTGGAGGCATACCACAATAGAAGTGCCAGCATGAAGCCAAATATTGTTCCTAATTGCATTCGGTCTGAGAGTTATATGATCACTTTTGAGGTGGA AGAGGAAAAGTTCCCTCTATTTGGAAAGAAGTACCAGCTAAAATTTGCTCATGACAGTGTGGCTGAAACCTTTTGTTTGGTTCATTTTCCGAGCTTGATC AGGTTGGCTCGAGAAGCTGGTCTAGAGTATGTGGAAATTCAGAATCTGACAGAATTTTATGATGACAACAAAATGCATTTCGCAGGAATGCTGTCGAATG CTGGTGCAACTCTCGTGGATCCAAGAGGAAGACTCCTTCCTAGATCATATGATGTTCTAGGTCTTTATTCAACCTTCATATTTCAGAAGCCTGATCTAGA CGCTGGCCCACCTATTGCCACTCCAATACTGGAAGAAGACGACTACAGTCACAAAGAGGCAAGTCTTTTTTATTGCATTAATCAGGTGGTGATTGAGAGA AATTGGGAGGCAACTGCGACCATATGGAAAGATGATGAGAAGGCAAGTTCAATACCAGTGCCAGCTTTAGTAATGGTATCAACGCCAGCACCGACGGAAG CCCCTCTTGGACTTGGCAAGATAAGTGAGCAGAAAGGGATATTGGGTCCAGGTCCCGCCGATTTACGCTTCTCAGAGGCTATGTGA
AA sequence Show only first row Show all	>Lus10037917 pacid=23163751 polypeptide=Lus10037917 locus=Lus10037917.g ID=Lus10037917.BGIv1.0 annot-version=v1.0 MAVGRSTWVPSSSTNGDWLLTGPTLGGPRILIVIHNFSGDIAHRLWTSGLDLRSTSQFMFRLGKPMVCKLERFQWPSDAARHFVEAFGFPTSEGLCDGGW IFPYCWRSKTLQDWEVFPKADCFINDYLEVQGKEQLMTSRPKPKRRLSAQSETEEHLHHHLETAISEGKFLPFYSVMLPFSVGRPDSIHYRLHEFAKLAL VNIFAHPYATVCDLYCGAGLDAEIWAGTQIGHYIGIDVPDSGLREIKEALESHRKAYTAEFFEADPCSENFEAQLKEKAGQADLVCCLQNLQLCFETEES ARKLLHNVSYLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSASMKPNIVPNCIRSESYMITFEVEEEKFPLFGKKYQLKFAHDSVAETFCLVHFPSLI RLAREAGLEYVEIQNLTEFYDDNKMHFAGMLSNAGATLVDPRGRLLPRSYDVLGLYSTFIFQKPDLDAGPPIATPILEEDDYSHKEASLFYCINQVVIER NWEATATIWKDDEKASSIPVPALVMVSTPAPTEAPLGLGKISEQKGILGPGPADLRFSEAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	1.0	0.8691
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	1.7	0.8454
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	2.0	0.8406
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	3.5	0.8382
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	4.0	0.8289
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	4.7	0.8477
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	5.2	0.8248
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10012325 [exp]	7.1	0.7485
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	7.3	0.7464
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	7.7	0.8382

Compare expression of checked genes

Lus10037917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.