Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04500 991 / 0 glycosyltransferase family protein 47 (.1) AT3G55830 117 / 3e-28 EPC1 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G80290 63 / 2e-10 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038646 [exp] 1446 / 0 AT5G04500 1009 / 0.0 glycosyltransferase family protein 47 (.1) Lus10028274 [exp] 113 / 4e-27 AT3G55830 463 / 5e-165 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10040216 [exp] 112 / 7e-27 AT3G55830 471 / 5e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10031680 [exp] 90 / 5e-19 AT3G55830 273 / 3e-90 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10027392 [exp] 76 / 2e-14 AT3G55830 201 / 2e-62 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10020174 [exp] 74 / 8e-14 AT1G80290 391 / 1e-136 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G028900 [exp] 1198 / 0 AT5G04500 992 / 0.0 glycosyltransferase family protein 47 (.1) Potri.010G232700 [exp] 1187 / 0 AT5G04500 987 / 0.0 glycosyltransferase family protein 47 (.1) Potri.010G191700 [exp] 114 / 2e-27 AT3G55830 439 / 1e-155 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G065800 [exp] 113 / 4e-27 AT3G55830 470 / 7e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G278400 [exp] 76 / 2e-14 AT1G80290 352 / 2e-121 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF09258 [flax] [poplar] Glyco_transf_64 Glycosyl transferase family 64 domain
Representative CDS sequence Show only first row Show all	>Lus10037920 pacid=23163737 polypeptide=Lus10037920 locus=Lus10037920.g ID=Lus10037920.BGIv1.0 annot-version=v1.0 ATGGGTGTAGTTGTGGTTTCCGGACCTGCTACTTCTGCCGGCGGCGGTGGAGTGGGAAATGGTGGTGGGTCGTCTACGGCGGCTGGAGGGAGCTGCTGTG ACATGGGTATGAAGTGTTGGTGTAAATGGAGGTTGGGAAGCCACCAGTTGTTCCCCTACCGGTTTCTCTCAGTTTTCTCTTCTGGGTTTCTCTTCTTGAT GGGTTGCTTAGTTGTTTACGCCTTGATTGGGGTCATCTATGGCTGGGTCGCCTTCAACAACAATCCTTATGTTCGATTTAACTCTTTTGGTTGCCTTGAA GATGGTGAAGGTTCTTGGTCTGTTGGTGTTTTCTATGGCGATTCCCCTTTCTCCCTCAAGCCAATTGAATCCGTGAACGTGTGGAAAAATGAGAGCAAAG CGTGGCCGGTTGCTAACCCAGTTATCACCTGTGCATCAGTCTCAGATGCTGGCTTCCCCAGCAACTTTGTTGCTGATCCATTTCTCTATGTGCAGGGGGA AACACTTTTCATTTTCTACGAAACAAAGAATCCATTCACTATGCAAGGAGATATTGGAGTTGCAAAAAGCTCTGATAAGGGAGCAACATGGCAACAATTG GGAATTGCCTTGGACGAGGATTGGCATCTCTCATATCCCTACGTGTTTGATTATCATGGCCAAATATATATGATACCAGAGGGCAGTTTGAAAGGAGATC TTCGTCTCTATCGAGCACTTGAGTTTCCATTGCAGTGGACGCTGGAAAAGATCCTGATAAAGAAGCCTTTAGTTGATTCCACTATCATAAATTATGATGG GCAATATTGGCTTTTTGGTTCCGACCACAGTGGTTTCGGGACGAAGAAGAATGGACAATTGGAAATCTGGCATAGCAGCTCCCCTCTGGGTCCATGGAAA CCACACAAGAAGAACCCCATCTACAACATTGACAAGAAAATGGGAGCAAGAAATGGGGGCAGACCATTCTTGTATAATGGAAATCTTTATCGCTTTGGTC AAGATTGTGGCGAAACATATGGAAGGCGTGTGAGGGCCTTCAAGGTGGAAACTCTTACCAAGAAGGATTATAAAGAAGTTGAGGTGCCCTTGGGCTTTGA GGAGTCTAAGAAGGGGCGGAATGCTTGGAATGGTGCTCGGTACCATCATCTTGATGTCCAGCAGCTAAGCTCCGGGGAATGGATTGGTGTTATGGATGGA GATAGGGTGCCATCTGGTGACCCAAGTCATCGTTTTATAGTTGGATGTGCCTCATTTGCATCAGCTGCAGCTGTTGTCATTGTTTTGGGCTTGCTACTTG GAGCAGTCAAGTGTATCATTCCGCTTAACTGGTGTGCTCACTATTCTGGGAAGAGAAGCGATGCACTGTTAGTCTGGGAAAGGTCAAATTTATTTTCTTC TCGGGTGAGGCGATTTTGCAGTCGTATTAACAGAGTGCCCACTTCGATTCGGGGGAAGATAAAGTACAATACTTGGGCCGGAAGACTGGTTTTGGCAGTG ATATTCGTAGTTGGAGCTGTGCTGATGTGCACTGGTGTTAAAAATGTTTATGGTGGCAATGGTGCTGAAGAAGCTTACCCGGTAAACGGTCAGTATTCTC AGTTCACTTTATTAACAATGACGTATGACGCACGGCTTTGGAACTTGAAGATGTATGTGAAGCATTATTCGAGGTGTGCTTCAGTGAAGGAGATAGTTGT AGTGTGGAACAAAGGGATCCCACCAATGGTAAGTGATCTGGACTCAGCAGTGCCCGTAAGGATTAGGGTTGAGAAGGAGAATTCATTGAATAACCGATTC AGAAAGGATCCGTTGATAAAGACACGTGCTGTTCTTGAGCTCGACGACGATATCATGATGCCCTGTGATGATGTGGAGCGCGGTTTCAATGTCTGGCGCC AACATCCTGATCGAATTGTAGGGTTTTATCCAAGGCTCATCAGTGGGAATCCTCTGAAATACAGAGCTGAGAAATATGCTAGAAGTCACAAAGGTTACAA CATGATACTAACTGGTGCTGCTTTCGTAGATGCTGAATCAGCTTTCGACAGGTACTGGGGTGACAAGGCCAAGGCAGGGAGGGAGCTGGTTGACAAATAC TTCAACTGTGAGGATGTGTTGTTGAATTACTTGTATGCAAATGCAAGCTCTGGAAAGACTGTTGAGTATGTGAGACCAGCATGGGCAATTGACACATCCA AGTTTTCTGGAGCTGCAATTAGCAAGAACACACAAGTACATTATGGGATTAGGAGTAGATGCCTGACGAGATTTACGCAAATGTATGGAAGTTTATCGGA CCGGAAGTGGGAATTCGATGGTCGGAAAGATGGCTGGGATCTATAG
AA sequence Show only first row Show all	>Lus10037920 pacid=23163737 polypeptide=Lus10037920 locus=Lus10037920.g ID=Lus10037920.BGIv1.0 annot-version=v1.0 MGVVVVSGPATSAGGGGVGNGGGSSTAAGGSCCDMGMKCWCKWRLGSHQLFPYRFLSVFSSGFLFLMGCLVVYALIGVIYGWVAFNNNPYVRFNSFGCLE DGEGSWSVGVFYGDSPFSLKPIESVNVWKNESKAWPVANPVITCASVSDAGFPSNFVADPFLYVQGETLFIFYETKNPFTMQGDIGVAKSSDKGATWQQL GIALDEDWHLSYPYVFDYHGQIYMIPEGSLKGDLRLYRALEFPLQWTLEKILIKKPLVDSTIINYDGQYWLFGSDHSGFGTKKNGQLEIWHSSSPLGPWK PHKKNPIYNIDKKMGARNGGRPFLYNGNLYRFGQDCGETYGRRVRAFKVETLTKKDYKEVEVPLGFEESKKGRNAWNGARYHHLDVQQLSSGEWIGVMDG DRVPSGDPSHRFIVGCASFASAAAVVIVLGLLLGAVKCIIPLNWCAHYSGKRSDALLVWERSNLFSSRVRRFCSRINRVPTSIRGKIKYNTWAGRLVLAV IFVVGAVLMCTGVKNVYGGNGAEEAYPVNGQYSQFTLLTMTYDARLWNLKMYVKHYSRCASVKEIVVVWNKGIPPMVSDLDSAVPVRIRVEKENSLNNRF RKDPLIKTRAVLELDDDIMMPCDDVERGFNVWRQHPDRIVGFYPRLISGNPLKYRAEKYARSHKGYNMILTGAAFVDAESAFDRYWGDKAKAGRELVDKY FNCEDVLLNYLYANASSGKTVEYVRPAWAIDTSKFSGAAISKNTQVHYGIRSRCLTRFTQMYGSLSDRKWEFDGRKDGWDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04500			glycosyltransferase family pro...		Lus10037920 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10038686 [exp]	3.2	0.9033
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10026032 [exp]	4.6	0.8854
AT4G37290			unknown protein		Lus10011512 [exp]	13.7	0.9333
AT5G04500			glycosyltransferase family pro...		Lus10038646 [exp]	15.0	0.9212
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	16.5	0.9220
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	17.0	0.9044
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	27.2	0.8933
AT3G07310			Protein of unknown function (D...		Lus10003162 [exp]	29.7	0.9007
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	31.7	0.8620
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	32.2	0.8830

Compare expression of checked genes

Lus10037920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.