Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14890 411 / 2e-138 phosphoesterase (.1.2) AT2G31320 55 / 8e-08 ATPARP2 poly(ADP-ribose) polymerase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038650 [exp] 679 / 0 AT3G14890 406 / 5e-136 phosphoesterase (.1.2) Lus10033871 [exp] 57 / 2e-08 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390500 [exp] 491 / 1e-174 AT3G14890 407 / 3e-138 phosphoesterase (.1.2) Potri.002G041300 [exp] 51 / 1e-06 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00645 [flax] [poplar] zf-PARP Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region CL0137 [flax] [poplar] HAD PF08645 [flax] [poplar] PNK3P Polynucleotide kinase 3 phosphatase
Representative CDS sequence Show only first row Show all	>Lus10037922 pacid=23163786 polypeptide=Lus10037922 locus=Lus10037922.g ID=Lus10037922.BGIv1.0 annot-version=v1.0 ATGCTGGCCACCACCGTCTCAACGCATTTCCGTAGTATTATGCTCAGCATTCCCTTCCGCCTGTTCGCCATTTCCTTCTCCAAACCCACTACTTCATTCC CCTCCATTTTCGTATCCCATTCCTTCCGCTCCTCTTCCATTACCATCATCACTCCCGCTACCTCACTTCGTTACTTCACTCATCCGCCTCCCTCCGCCGC AGCAGCCATCCCTATGGCTCCTTCTTCCAAACCTAAAATCGTAGCCGAATACGCCAAATCCGGCCGATCCTCCTGCAAGAAGTGCTCCCAGTCCATTCCT ACCAAATCCCTACGGCTAGGTCTCGTCTCCCGCGACTCCCGAGGGTTTGACATGACTAAATGGCACCATATGCGTTGCTTCTCCGAACCCTTCGACTCCG TTGACCTGGTTTCCGGCTTCGATTCTCTCCAGAGTTGTGATCAGGAGGATTTGAAGAAGTTGGTGGATGCATGCGGGAGTTCCAATGGAGACACTGAGGT TGAGAAACGAAGCAGAAAGAGCCCTGAATCTGATAATGATGGAGTCCACGATGGAGCTGAGAATAAGATCTCTAAGAAAGTTAAGCTGACGGTCAACGAA GAAACCAAGATCGACATAGTGTTTTCCACCTCTGATGTGAAGGACACATACAAGGGTGCTACTCTACTTCCCAAGTGGAAGGCCTTCCAGACAGTCATTT TTCTTCAGACGGAGGATGGACTTCGTGACTCAGACAAGATCGCTGCATTTGATTTTGATGGATGTCTTGCAAAAACGTCTGTGAAGAGAATAGGTCCAGA CGCCTGGTCCCTAATGTATCCTTCTATTCCAGACAAGCTCAAGAGCTTATACAATGATGGTTACAAACTGGTTATCTTTACAAATGAATCTAACATAGAT CGCTGGAAGAACAAGAGACAAGTAGCCGTGGATTCCAAAATTGGGCGCCTGAACAATTTCATTGAGCATGTGAAGCTACCAATGCAGGTTTTTATAGCAT GTGGCTTTTCTGCTGGTGGTGTGGAGGATTCGTATCGCAAACCCAACCCTGGAATGTGGCGTCTCATGGAGAATCATCTCAACTCTGGGATTCCAATTGA TATGGAACAGTTATCTTTCTATGTTGGTGATGCAGCGGGGAGAAACGATGACCATGGTGATGCTGATATAAAATTTGCACAGGCAGTGGGACTGAAGTTT CATGTTCCTGAGGACTTCTTCGGTGCATGA
AA sequence Show only first row Show all	>Lus10037922 pacid=23163786 polypeptide=Lus10037922 locus=Lus10037922.g ID=Lus10037922.BGIv1.0 annot-version=v1.0 MLATTVSTHFRSIMLSIPFRLFAISFSKPTTSFPSIFVSHSFRSSSITIITPATSLRYFTHPPPSAAAAIPMAPSSKPKIVAEYAKSGRSSCKKCSQSIP TKSLRLGLVSRDSRGFDMTKWHHMRCFSEPFDSVDLVSGFDSLQSCDQEDLKKLVDACGSSNGDTEVEKRSRKSPESDNDGVHDGAENKISKKVKLTVNE ETKIDIVFSTSDVKDTYKGATLLPKWKAFQTVIFLQTEDGLRDSDKIAAFDFDGCLAKTSVKRIGPDAWSLMYPSIPDKLKSLYNDGYKLVIFTNESNID RWKNKRQVAVDSKIGRLNNFIEHVKLPMQVFIACGFSAGGVEDSYRKPNPGMWRLMENHLNSGIPIDMEQLSFYVGDAAGRNDDHGDADIKFAQAVGLKF HVPEDFFGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	0	1
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	3.2	0.8605
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	9.5	0.7983
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	11.7	0.8603
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000965 [exp]	12.6	0.8162
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10014124 [exp]	13.4	0.7947
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10031683 [exp]	14.6	0.7184
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	17.6	0.7039
AT1G61670			Lung seven transmembrane recep...		Lus10012872 [exp]	20.6	0.7066
AT5G27670		HTA7	histone H2A 7 (.1)		Lus10029899 [exp]	21.5	0.6856
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	23.8	0.7827

Compare expression of checked genes

Lus10037922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.