Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52190 487 / 1e-172 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT2G01470 134 / 1e-35 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT5G50650 132 / 5e-35 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 132 / 5e-35 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 48 / 7e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 47 / 1e-05 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT2G37160 46 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 44 / 0.0001 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G53390 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT5G40880 43 / 0.0003 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038651 [exp] 735 / 0 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10017451 [exp] 647 / 0 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 629 / 0 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10035728 [exp] 153 / 3e-42 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10037313 [exp] 148 / 4e-40 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10038425 [exp] 54 / 1e-07 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 54 / 1e-07 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 47 / 1e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10022797 [exp] 46 / 6e-05 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232400 [exp] 593 / 0 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G029200 [exp] 592 / 0 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.008G130300 [exp] 163 / 3e-46 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G111800 [exp] 150 / 2e-41 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.011G156900 [exp] 50 / 1e-06 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 48 / 7e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 45 / 3e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 45 / 5e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G129100 [exp] 43 / 0.0003 AT2G37160 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G088800 [exp] 42 / 0.0005 AT3G53390 813 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037923 pacid=23163762 polypeptide=Lus10037923 locus=Lus10037923.g ID=Lus10037923.BGIv1.0 annot-version=v1.0 ATGGAATCGGGGCAGGGAACCGTGGTTTTCGGGTCTTGGATCCGGAGACCAGAGAACGTGAATCTCGTCGTTTTGGGCAAGTCCAGAGCTGCTAGTGGTC GCCATTCTTCTTCCACATCGTCATTGCTCGAGATCTTCACCTTCGATCACGCCACCAATTCACTCTCTGCCTCTCCCTTGGCTACTTACGAGCTTGAAGA GACGGATGGTGATTTGGTTTCGATTGCCGTTCATCCCAGCGGTGATGATTTCGTCTGTTCTACGACCAACGGTGGCTGCAAATCATTTGAGTTGGGAGGT GAAGAAACAAACTTTAAGCTGCGGGCTAAGGAATTGTCGGCTCTTCAAAGTGTTGGTCCGCAGAAATGTCTGGCTTTTAGCGTCGATGGCTCTAAACTTG CATCTGGTGGTGTGGATGGGCATCTCAGAATTTTAAACTGGCCAACTCTAAGCAGCGTTCTTGATGAACCAAGTGCTCACAAATCATTCCAGGATATGGA TTTCAGCCTTGATTCAGAGTTCTTAGCTTCAACGTCTATTGATGGTTCTGCAAGAATATGGAAGACAGAGGACGGTTCATCAGTAGTTTCCCTGGCTCGA AACGAAGACGAGAGAATAGAATTATGCCGATTCTCCAAAGATGGAACAAAGCCCTTTCTGTTTTGTGCTGTTCAAAAGGGTGATAAGGGTGTCACTTCAG TTTATGATATAAGCACGTGGAAAAAAATTGGGTTCAAGAGGCTTCTTAGAAAGCCTGCTTCTATGATGTCTGTGAGCCTAGATGGGAAATATCTCGCCCT GGGTAGTAAGGATGGTGACATATGTGTAGCTGAAGTGAGGAAGATGGAAATTAGCCACTGGAGCAGGAGGCTGCACCTTGGTACCTCCTTTACATCTCTG GACTTTTGCCCTACTCAGAGGGTCGTGCTTACGACATCCAATCAATGGGGTGCCGTAGTGACAAAGCTAACAGTTCCAGCAGATTGGAAAGAGTGGCAAA TCTATGTGTTGCTTGTGGGACTGTTCTTAGCATCTGCAGTGGCGTTCTACATCTTCTTCCAGAAATCTGATTCATTCTGGAACTTCCCAATGGGCAGAAA TCAACCACCGGGAAGAGCAAGGTTTCAGCCCATATTACGGGAGACGCCAGAAGATCCATTTGGGCCTTTGGATTTGTAA
AA sequence Show only first row Show all	>Lus10037923 pacid=23163762 polypeptide=Lus10037923 locus=Lus10037923.g ID=Lus10037923.BGIv1.0 annot-version=v1.0 MESGQGTVVFGSWIRRPENVNLVVLGKSRAASGRHSSSTSSLLEIFTFDHATNSLSASPLATYELEETDGDLVSIAVHPSGDDFVCSTTNGGCKSFELGG EETNFKLRAKELSALQSVGPQKCLAFSVDGSKLASGGVDGHLRILNWPTLSSVLDEPSAHKSFQDMDFSLDSEFLASTSIDGSARIWKTEDGSSVVSLAR NEDERIELCRFSKDGTKPFLFCAVQKGDKGVTSVYDISTWKKIGFKRLLRKPASMMSVSLDGKYLALGSKDGDICVAEVRKMEISHWSRRLHLGTSFTSL DFCPTQRVVLTTSNQWGAVVTKLTVPADWKEWQIYVLLVGLFLASAVAFYIFFQKSDSFWNFPMGRNQPPGRARFQPILRETPEDPFGPLDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10037923 [exp]	0	1
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	2.0	0.9408
AT3G19660			unknown protein		Lus10012438 [exp]	3.5	0.9328
AT4G29330		DER1	DERLIN-1 (.1)		Lus10012934 [exp]	6.2	0.9184
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	10.5	0.9325
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	10.6	0.9087
AT1G11320			unknown protein		Lus10013574 [exp]	13.9	0.9255
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	14.7	0.9203
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	15.0	0.9252
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	16.3	0.9255
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	17.1	0.9041

Compare expression of checked genes

Lus10037923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.