Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52180 442 / 7e-155 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) AT3G10940 149 / 5e-42 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT3G01510 105 / 1e-24 LSF1 like SEX4 1 (.1) AT3G06110 41 / 0.0005 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038652 [exp] 638 / 0 AT3G52180 456 / 8e-161 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10029052 [exp] 138 / 1e-37 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10034214 [exp] 135 / 7e-37 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10008779 [exp] 105 / 3e-24 AT3G01510 703 / 0.0 like SEX4 1 (.1) Lus10022236 [exp] 100 / 6e-23 AT3G01510 567 / 0.0 like SEX4 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029300 [exp] 500 / 1e-177 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.010G232200 [exp] 489 / 4e-173 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.019G048600 [exp] 140 / 2e-38 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.001G349000 [exp] 112 / 8e-27 AT3G01510 775 / 0.0 like SEX4 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10037924 pacid=23163662 polypeptide=Lus10037924 locus=Lus10037924.g ID=Lus10037924.BGIv1.0 annot-version=v1.0 ATGAGCTCAAATCACCGTCTCTCCACCTCCCGCTATTTGGCGGGAACCGCAGATCCTCGGTTTTGCCCCGACGGACCATCGATTGCCCATCGAGGAAGCC TTCCTCCGCAAATCTGGTACTTTGCTCTCCCTTTCGGTTTCATTTCCATTGTGGCCTACTCACGCACAGCTCTCTCACATTATGCTATATCACGACAGGC GATGCCGAATTCTCTTAAGCCTAATCGTCGACTTTCCTTGAAGGCAATATCTGGGTCGACATCGAGTGCCGAAAGTGGCGAGGATGTAAAGGCTGGAGAA AAATCTGATGTGTACAGTAACAACATGACAGAAGCTATGGGTGCAGTTTTGACGTACAGGCACGAGCTTGGGATGAATTACAACTTCATCCGTCCAGACT TGATTTGTGGATCATGCCTGCAGACACCTGAAGACGTTGACAAGCTTCGTAAAATTGGAGTGAAAACCATATTTTGCTTGCAAAAGGATTCCGACTTGGA ATACTTTTCGGTAGATATTGGTGCCATTAGAAAGTATGCTAACTCGTATGATGATATTCAGCATTTGCGTGCTGAAATAAGGGATTTTGATGCATTCGAC TTGAGGATACGGCTTCCTGCTGTAGTTAGCAAATTATACAAGGCTATAAACCGGAATGGTGGTGTGGCATACATTCACTGCACAGCTGGATTGGGAAGAG CTCCTGCTACGGTGATGGCATATATGTTTTGGGTTCAAGGCTACAAACTTAAGGAAGCGCATGATCTGCTGCTGAGCAAACGCTCTTGCTTCCCGAAGAT GGAGGCTATCAAGAGTGCAACCGCTGACATACTTGCAGGATTCAGAAAGAAGCTTGTGACATTATCATGGAAAGATAGCAATTGCTCTACTGTGGAAATC TCTGGTCTTGATATTGGTTGGGGTCAGAGAATTCCTCTGAGACTTGACGCTGAACAAGGCTTGTGGGTTCTTGAGAGGGAACTTTTGGAAGGAAGGTACG AATACAAGTACATTGTTGATGGTGAATGGACAAGCAATAAAAACGAGCTACTCACTTCTCCGAATAAAGACGGCCATATCAACAACTACGTCGAGGTGAT CGATGAAGGAGATAGTGATAGAGCCGAACTAAGGAAGAGGGTAACGAGTGATGATCCGTACCTCACGAGGGCTGAGCGGTTGAAAATAAGAGAGTTTCTT GAAGCGCAACCCGACGATGAAGACGAGAACTGA
AA sequence Show only first row Show all	>Lus10037924 pacid=23163662 polypeptide=Lus10037924 locus=Lus10037924.g ID=Lus10037924.BGIv1.0 annot-version=v1.0 MSSNHRLSTSRYLAGTADPRFCPDGPSIAHRGSLPPQIWYFALPFGFISIVAYSRTALSHYAISRQAMPNSLKPNRRLSLKAISGSTSSAESGEDVKAGE KSDVYSNNMTEAMGAVLTYRHELGMNYNFIRPDLICGSCLQTPEDVDKLRKIGVKTIFCLQKDSDLEYFSVDIGAIRKYANSYDDIQHLRAEIRDFDAFD LRIRLPAVVSKLYKAINRNGGVAYIHCTAGLGRAPATVMAYMFWVQGYKLKEAHDLLLSKRSCFPKMEAIKSATADILAGFRKKLVTLSWKDSNCSTVEI SGLDIGWGQRIPLRLDAEQGLWVLERELLEGRYEYKYIVDGEWTSNKNELLTSPNKDGHINNYVEVIDEGDSDRAELRKRVTSDDPYLTRAERLKIREFL EAQPDDEDEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	0	1
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	2.4	0.9027
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	2.6	0.9129
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	4.0	0.9049
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10038652 [exp]	4.2	0.8870
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	4.6	0.8882
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	8.8	0.9115
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10015874 [exp]	9.5	0.9045
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	11.0	0.8873
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039468 [exp]	11.2	0.9103
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	14.4	0.8716

Compare expression of checked genes

Lus10037924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.