Plant FIBer expression Database

Lus10037925 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038653
[exp]
151 / 2e-48 AT5G02420 47 / 2e-07 unknown protein
Lus10017454
[exp]
45 / 2e-06 ND 38 / 3e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G231600
[exp]
64 / 4e-14 AT5G02420 44 / 1e-06 unknown protein
Potri.008G029600
[exp]
62 / 2e-13 AT5G02420 48 / 5e-08 unknown protein
Potri.010G231700
[exp]
45 / 7e-07 AT5G04470 / SIAMESE, cyclin-dependent protein kinase inhibitors (.1)
Potri.001G212300
[exp]
41 / 4e-05 AT5G02420 43 / 8e-06 unknown protein
Potri.009G003400
[exp]
38 / 0.0003 AT5G02420 45 / 7e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10037925 pacid=23163932 polypeptide=Lus10037925 locus=Lus10037925.g ID=Lus10037925.BGIv1.0 annot-version=v1.0
ATGTCCGCACATCTCGATCCCCTCCCTGATTTGCCCAAAATCCGACTCATAACCCAGCATCCTACGGAAACGACGACACCGGCGGAGCCTTCCACCAGCG
GATCCAGTGTCGACGATGGACCCGCGGCGATTATCAACGGAAATTCAGATCAGAAGCAGGAGAATTATGGAGATGATGAGTGCCGCACGCCGAAATCAGC
CGAGTACAAGATCCCGGCAATCCTGAGATGCCCGCCGGCCCCGAGGAAACCGAAATCCAGACCGTCAGCCTCTTGTAAGCGGAAGCTGATGTCGCAATTG
GACTTCTTCGACGTGGTCAACCGCGAGGAAGTTGAATCGTTCTTCCGATCCGCTGCCTCCAAACGTAGGTGCCCCGATCTCGTACCAATGTAA
AA sequence
>Lus10037925 pacid=23163932 polypeptide=Lus10037925 locus=Lus10037925.g ID=Lus10037925.BGIv1.0 annot-version=v1.0
MSAHLDPLPDLPKIRLITQHPTETTTPAEPSTSGSSVDDGPAAIINGNSDQKQENYGDDECRTPKSAEYKIPAILRCPPAPRKPKSRPSASCKRKLMSQL
DFFDVVNREEVESFFRSAASKRRCPDLVPM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02420 unknown protein Lus10037925
[exp]
0 1
AT4G02380 SAG21, ATLEA5 Arabidopsis thaliana late embr... Lus10029634
[exp]
2.8 0.8502
AT1G70090 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE... Lus10013296
[exp]
6.2 0.8714
AT3G28917 ZF_HD MIF2 mini zinc finger 2 (.1) Lus10015370
[exp]
8.7 0.8683
AT3G04120 GAPC1, GAPC-1, ... glyceraldehyde-3-phosphate deh... Lus10006435
[exp]
9.9 0.8368
AT4G01200 Calcium-dependent lipid-bindin... Lus10002155
[exp]
9.9 0.8410
AT1G28200 FIP1 FH interacting protein 1 (.1) Lus10040539
[exp]
10.2 0.8434
AT5G40190 RNA ligase/cyclic nucleotide p... Lus10039477
[exp]
11.4 0.8392
AT3G15350 Core-2/I-branching beta-1,6-N-... Lus10019477
[exp]
12.6 0.8536
AT4G29340 PRF4 profilin 4 (.1) Lus10034988
[exp]
14.0 0.8488
AT3G11660 NHL1 NDR1/HIN1-like 1 (.1) Lus10016960
[exp]
14.0 0.8350

Lus10037925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.