Plant FIBer expression Database

Lus10037926 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10520 229 / 2e-78 ATGLB2, ARATHGLB2, NSHB2, AHB2 NON-SYMBIOTIC HAEMOGLOBIN 2, ARABIDOPSIS HEMOGLOBIN 2, haemoglobin 2 (.1)
AT2G16060 155 / 6e-49 ATGLB1, ARATHGLB1, NSHB1, AHB1 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038655
[exp]
224 / 2e-76 AT3G10520 169 / 3e-55 NON-SYMBIOTIC HAEMOGLOBIN 2, ARABIDOPSIS HEMOGLOBIN 2, haemoglobin 2 (.1)
Lus10005467
[exp]
155 / 6e-49 AT2G16060 237 / 1e-81 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G110800
[exp]
157 / 9e-50 AT2G16060 253 / 1e-87 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0090 Globin PF00042 Globin Globin
Representative CDS sequence
>Lus10037926 pacid=23163794 polypeptide=Lus10037926 locus=Lus10037926.g ID=Lus10037926.BGIv1.0 annot-version=v1.0
ATGGAGTTCACAGAAAGGCAAGAACATTTGGTGAAGGAATCATGGCAAGTTATACAGCAAGACATCCCTCACTACAGCCTTGTCTTCTTCACAACGATTC
TGGAGATAGCTCCAGCAGCAAAGCAGATGTTCTCCTTCCTCAGAGATTCAGATGAGATCCCGCTCAACAACCCTAAGCTCAAAGCCCATGCCGTTAAAGT
CTTCAAGATGACGTGCGAGTCGGCAATACAATTAAGGGAGAAGGGGGAAGTGGTAGTGAAGGACACAACACTCCAATATCTGGGTTCGGTCCATGTCAAG
GCTGGGGTTGTGGGGCCTCACTTCGAGGTAGTGAAGGAAGCACTGGTCAGGACATTGAAAGGAGGAGTTGGAGAAGACAAATGGAGCTCCGATATGGAAG
AAGCTTGGGTCTATGCTTACGACCAACTTGCTGCTGCCATCAAAGCTCACATGATCTCACCCCCCGCCGCCGCTTCCGCTTCTTGA
AA sequence
>Lus10037926 pacid=23163794 polypeptide=Lus10037926 locus=Lus10037926.g ID=Lus10037926.BGIv1.0 annot-version=v1.0
MEFTERQEHLVKESWQVIQQDIPHYSLVFFTTILEIAPAAKQMFSFLRDSDEIPLNNPKLKAHAVKVFKMTCESAIQLREKGEVVVKDTTLQYLGSVHVK
AGVVGPHFEVVKEALVRTLKGGVGEDKWSSDMEEAWVYAYDQLAAAIKAHMISPPAAASAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10520 ATGLB2, ARATHGL... NON-SYMBIOTIC HAEMOGLOBIN 2, A... Lus10037926
[exp]
0 1
AT1G04280 P-loop containing nucleoside t... Lus10022217
[exp]
1.4 0.7868
AT5G07040 RING/U-box superfamily protein... Lus10005389
[exp]
2.8 0.7987
Lus10020868
[exp]
3.5 0.7633
AT3G04950 unknown protein Lus10000934
[exp]
5.0 0.7616
AT1G28100 unknown protein Lus10001800
[exp]
7.9 0.7492
AT3G27020 YSL6 YELLOW STRIPE like 6 (.1) Lus10012549
[exp]
9.2 0.6937
AT2G35130 Tetratricopeptide repeat (TPR)... Lus10018318
[exp]
11.0 0.7308
AT1G52340 SIS4, SDR1, ISI... SHORT-CHAIN DEHYDROGENASE REDU... Lus10016354
[exp]
12.5 0.7587
AT3G58140 phenylalanyl-tRNA synthetase c... Lus10028547
[exp]
16.4 0.7073
AT3G15570 Phototropic-responsive NPH3 fa... Lus10037848
[exp]
16.7 0.7112

Lus10037926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.