Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22060 94 / 6e-19 unknown protein AT1G63300 89 / 1e-17 Myosin heavy chain-related protein (.1) AT5G52280 71 / 5e-12 Myosin heavy chain-related protein (.1) AT5G41140 46 / 0.0002 Myosin heavy chain-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016240 [exp] 228 / 2e-60 AT5G52280 122 / 8e-28 Myosin heavy chain-related protein (.1) Lus10017237 [exp] 226 / 3e-60 AT1G63300 112 / 8e-25 Myosin heavy chain-related protein (.1) Lus10029303 [exp] 219 / 2e-57 AT5G52280 126 / 6e-29 Myosin heavy chain-related protein (.1) Lus10001481 [exp] 99 / 1e-20 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10020915 [exp] 98 / 5e-20 AT1G22060 985 / 0.0 unknown protein Lus10033461 [exp] 92 / 2e-18 AT1G22060 978 / 0.0 unknown protein Lus10024517 [exp] 87 / 6e-17 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 72 / 2e-12 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10039218 [exp] 66 / 2e-10 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029800 [exp] 587 / 0 AT1G22060 117 / 5e-26 unknown protein Potri.006G120400 [exp] 304 / 5e-85 AT1G22060 121 / 2e-27 unknown protein Potri.002G091700 [exp] 92 / 3e-18 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 91 / 4e-18 AT1G22060 1031 / 0.0 unknown protein Potri.003G124600 [exp] 87 / 4e-17 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.015G143800 [exp] 82 / 1e-15 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 74 / 7e-13 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 48 / 6e-05 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.010G231366 [exp] 0 / 1 ND / Potri.010G231432 [exp] 0 / 1 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037927 pacid=23163711 polypeptide=Lus10037927 locus=Lus10037927.g ID=Lus10037927.BGIv1.0 annot-version=v1.0 ATGTTGAGATTGCAGAAGAAACGATTTGAGTTCAAGTTCTCCACCCTCCAAGCTCTTCAGGTACCAAAGGGATGGGATAGGCTGTTAGTGTCTATGGTTT CCATAGAAACAGGCAAAACTGTAGCCAAGTCCGGCAGGGCTGTGGTGAGAAATGGAAGCTGCAGATGGACAGAGACGTTGTCCGAGTCAATTGAAACTTC AAAAGACAACCAGGAATTCATCTTCAAGTTTGTTGTTGCCATGGGAGCTAGAAATGGCATTCTTGGAGAGGCAACATTTAACTTGTCAAACTATAAGAGT TCAAAGACTGCTGTTTCTGTATCATTCCCACTGAAAAAGTGCACCCATGGAACCGTCTTACAGGTCAAAATTCAATGCTCGGTCACACACGAAAAACCAA GGGAGGAACGGTCGGAGGAGACAGGGTTATATGCAGAGCATTTTAATCTTGCATACATTGACGTGGAAAACAAATCAGATGCTTCTTCTGTTCATCATCC CGATAGTCCATCTCATACTCCTGAGTCATCTAACAAGGACTCGAAATTCTCAGCGTCAGGTTCACTTTGTAGCCTTGACTCGCCCAGATCAATGGACAGT AGCTTGAGCAGAGAAAACTCCTCTCGTGAAAATAACTTAACCAGCAATCCGGAAGATTTGGATAGCAATTTCCACGATCCATCTGGATTAGATCACTTCT CCTTCGGCTCAAAGCCCTCAGCTATACCAAGACTACCACAGAGTAAGAGAGATGAATATAGCCTCATTTCTTCTAGCGTGGCGTCATGGAATGGTAGATC ATCAAAAAGAATTCCAGAATCTGGGGAAGTTTCGACTGATGAACTCCGGGCACAGGCTAAGATGTGGGAACAGAATGCTAGGAAGTTGATGGCTGATGTA GAGAAGTTGCAGGAGGATATTTCGGGTTACTCGAAACAGCAGGCATGCCTTGAAGAGGAACTCTCGGGATCGAGGAGAGAATGTGATGGACTGAAGAAGG AAATGCAGCAACTGAAGATCCTTTTAGAGGAATCAGCAATGGCAAGTGGAAGTTCCGATTTTCAATCATCAGAATTGGAAGCCGAGATCAAGTTTCAGAA AGAGTCACATGCTGACTTGGCTTTTCAACTTAAGAAAACACAGGAGTCAAATATGGAGCTTGTTTCAACCCTCCTTGAACTGGAAGATACTGTTGAAGGA CAGAAGATGGAAATCGCTAGTCTTTCAAAGCTGCTGTCCAAAAATAAAGTCTCCAGACCTTTGCTGTACGGCGAAGAAGATGAAAGCCGACATGTGTTTG TAAAGAATTCGAGAAATGTCATCTGTAATTGGGATATGGAAGGGGAGGAAGCAATCCTTCAATTGGAAGCCGAGTTGTCTGAAGCTCTGGATCCTTCTAA TTCCGGAGATCAGGGTCAATCCACTCTTGTCAAAGAAATTACAGTTCTGAAACTTAAGATGGAGGAACTTGAGAAAGATTGCAGTGAGCTCACTAATGAA AATCTACAACTACTTCTGAAGCTCAAAGAATCACACAAGGATCCTCCAACATCTGGATTAGATTCCGATCATACTGTGTCCAAACCTCTCCAGGATATGT CGATCGTATTATCCGAGGTGAACAAGCTTAAGTCTTGTAATCTGCTGAAGGACCAAGAGGTTGAAGCTCTAAAGCTTGATAAGAAGAAGTTGGAGTCTCA GGTTTCCAACCTTCTGACGGAGAAACAGCGACTGGAGGAAAAGGTGGATGCAATGTTCATCGAAGACTCGGCTACATCCAGATGTTTTGATGACTCCGGA GATGAAATGACAATGTTCAGTAGCAGTGTGAGCTCCCAAGTGTCAGCAAGGCAGTCACCAGGGCTCGAAAGGTGCAAAAGTGAACTGGAAGCTCACTTGA CTGAAATGGAGAAAGAGAACGTGCAACTCTACGAAAGGATATGTGGGCTGGAAGCACAGTTAAGATACTTGACAGACGAGAGGCAGACGAATCGCTTGGC GGTAGGAACACAGTTAAGATACTTGACAGACCAAAGCCAGTTGAATCGCTTGGAAGTAGAAATCTCTCAGTCGGACGCCATGAGTCTCAAGGAAGAGATT GGGAGATTGAAAGGTGAACTAGAAATGCAAAAGTTTGATTTGAGGCAGAAGACTCAGAGTGTACACAAGCAGTGGTTGGAAATGCAAGAAGAGTGTGAAT CCCTTAAGATGGAAAATCTGAAATTACTAAGTTCTTCTGGAAGTCTTAAAGAAGAATGCAGTTTGCTTCAGAAATCAAACGTGGAGCTAAAGAAGCAAAA AGCTTTGCTGCATGAACAGTATTCCGTATTGGAAGCTGAACTGAAGGATTCGGAAAAGGTTGTAATGGACTTGTTCAAGGAAGTTGAATCCCTTGAAGGA AAGTATGATTCTTTGCTGGAAGAAATTTCCTCCAAAGAGAGGGCCTTTATTCTGGAACTAGATACACTTATCCATGACAACATAACACAGAAACATAAAC TAGCTGCGGAAATGAGCCTTTTGGATCAGATGTGCCAGGAGAAAACGGTTTTAGTAGAGAATCTTCAGTCAGAGGTTGAGCTCCTTACTGCAAAGATATC CGTAACTCATGATGAACAAGAGATAAGCGGCTCAGAAGCTCTGCTTGAAGTATCTCGTATGCGAGCAGATAAAGCTACACTTGAGGCTACACTGAAAGAT GCTCAGAAGAAGCTTAAATTATCAGAGATCAACTTCGGTACCCATCAGATGGAATCTGAATTGAAGCTGCAAGAAGTTAGAGATGAACTGGAAGCTTGCA AACAGAAGGAGGAAGTTCGGGCAGCAGACAATGAGAAATTGTTAGAATTGGTGGAAGACGTAAACTCTAGTAAAGAGAAGCAGAGAGGCACAATTAGGTG GCTTGAGTTGAAACTCAAAGCTGCTGAATATGACAAGCTGCAAGTGGCAGAAGAAATTTCCAGTCTTGAGGCTCAAATGCACAAAACAACCTTGCTTCAA GAAGAAAACTTGGCTCTTAAGAAATCACTTAACGAGGTGAAATTCGAAAATCAAAGGCTCCAAGCATCGTTGGAGATCTTATCTGAAGATTATGAAGGGC TCAAGACCGAGAAAATGGTAGCAGGAGAGAAGATTTCCAACATGGAGAAGGCATTGATAGAACTAGAGGAGTGCAAACGTAGCAAAGCTTCCCTCGAGGA AAAGGTTTTCCGCATCGAATTGGATTTAACTGCTAGAGAAGCACAAGGTGGTCAGGATGCTGAACTGAAAAATGAGCTCGCACGAGTAAAGATCACAAAT AGTGGACTGTTCAGGAGGATCAGACACCTGGAGGAGGAGAAACAAGAACATCTGAGAAAGGTTCAGACACTTGAGAAGGCATTAAAGCAGACAAAAGAAA CCAAAGTTTATCATCACGATTCTAGCAATCCTAGCTCTCCTGCCTCATCTGAATCTGGGGACATTGGACCTGAAGACACAACGGCTGCAACAAAACCAAC TTGTAAGAAAGGGAACCTGGTCAGAGGAACCGACCCTTGGTCACAGATACAGCTACTTGAGGATGAACTAGTAGAAGCACTGGAGGCAAATGACATGTAC AAATCCCAGCTTAAGTGTGTGTTGACTGGTTCCAAGTCATCACTTGCATCGGAGTTGAAAGATCTACAAGAACGATTCTCCCATATGAGCCTGAAATATG CAGAGGTTGAAGCTGAACGAGCACAGCTTGTGTTGAAGCTCAGATCTGATACTAGTGGGAAAAGGGTGCCACTTGGATTATAA
AA sequence Show only first row Show all	>Lus10037927 pacid=23163711 polypeptide=Lus10037927 locus=Lus10037927.g ID=Lus10037927.BGIv1.0 annot-version=v1.0 MLRLQKKRFEFKFSTLQALQVPKGWDRLLVSMVSIETGKTVAKSGRAVVRNGSCRWTETLSESIETSKDNQEFIFKFVVAMGARNGILGEATFNLSNYKS SKTAVSVSFPLKKCTHGTVLQVKIQCSVTHEKPREERSEETGLYAEHFNLAYIDVENKSDASSVHHPDSPSHTPESSNKDSKFSASGSLCSLDSPRSMDS SLSRENSSRENNLTSNPEDLDSNFHDPSGLDHFSFGSKPSAIPRLPQSKRDEYSLISSSVASWNGRSSKRIPESGEVSTDELRAQAKMWEQNARKLMADV EKLQEDISGYSKQQACLEEELSGSRRECDGLKKEMQQLKILLEESAMASGSSDFQSSELEAEIKFQKESHADLAFQLKKTQESNMELVSTLLELEDTVEG QKMEIASLSKLLSKNKVSRPLLYGEEDESRHVFVKNSRNVICNWDMEGEEAILQLEAELSEALDPSNSGDQGQSTLVKEITVLKLKMEELEKDCSELTNE NLQLLLKLKESHKDPPTSGLDSDHTVSKPLQDMSIVLSEVNKLKSCNLLKDQEVEALKLDKKKLESQVSNLLTEKQRLEEKVDAMFIEDSATSRCFDDSG DEMTMFSSSVSSQVSARQSPGLERCKSELEAHLTEMEKENVQLYERICGLEAQLRYLTDERQTNRLAVGTQLRYLTDQSQLNRLEVEISQSDAMSLKEEI GRLKGELEMQKFDLRQKTQSVHKQWLEMQEECESLKMENLKLLSSSGSLKEECSLLQKSNVELKKQKALLHEQYSVLEAELKDSEKVVMDLFKEVESLEG KYDSLLEEISSKERAFILELDTLIHDNITQKHKLAAEMSLLDQMCQEKTVLVENLQSEVELLTAKISVTHDEQEISGSEALLEVSRMRADKATLEATLKD AQKKLKLSEINFGTHQMESELKLQEVRDELEACKQKEEVRAADNEKLLELVEDVNSSKEKQRGTIRWLELKLKAAEYDKLQVAEEISSLEAQMHKTTLLQ EENLALKKSLNEVKFENQRLQASLEILSEDYEGLKTEKMVAGEKISNMEKALIELEECKRSKASLEEKVFRIELDLTAREAQGGQDAELKNELARVKITN SGLFRRIRHLEEEKQEHLRKVQTLEKALKQTKETKVYHHDSSNPSSPASSESGDIGPEDTTAATKPTCKKGNLVRGTDPWSQIQLLEDELVEALEANDMY KSQLKCVLTGSKSSLASELKDLQERFSHMSLKYAEVEAERAQLVLKLRSDTSGKRVPLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22060			unknown protein		Lus10037927 [exp]	0	1
AT5G42710			unknown protein		Lus10010806 [exp]	2.2	0.9430
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	3.0	0.9221
AT3G01810			unknown protein		Lus10015805 [exp]	3.2	0.9406
AT5G59990			CCT motif family protein (.1.2...		Lus10028137 [exp]	5.1	0.8891
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	5.9	0.9185
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	6.3	0.9053
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	6.6	0.8902
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	9.5	0.9065
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	10.7	0.8648
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	11.0	0.9189

Compare expression of checked genes

Lus10037927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.