Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04460 753 / 0 RING/U-box superfamily protein (.1.2.3) AT2G27950 240 / 2e-67 Ring/U-Box superfamily protein (.1) AT2G34920 100 / 1e-21 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT1G30860 100 / 2e-21 RING/U-box superfamily protein (.1) AT4G20160 60 / 8e-09 unknown protein AT2G38195 55 / 9e-08 RING/U-box superfamily protein (.1.2) AT1G59560 55 / 1e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT2G38220 55 / 2e-07 RING/U-box superfamily protein (.1) AT3G06140 53 / 5e-07 RING/U-box superfamily protein (.1) AT5G19080 53 / 5e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038656 [exp] 1424 / 0 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10017455 [exp] 979 / 0 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 971 / 0 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 437 / 4e-141 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 215 / 3e-61 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10036249 [exp] 62 / 2e-09 AT4G20160 182 / 3e-48 unknown protein Lus10038389 [exp] 61 / 2e-09 AT4G20160 155 / 2e-40 unknown protein Lus10004419 [exp] 57 / 5e-08 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 55 / 2e-07 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030100 [exp] 1040 / 0 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 1034 / 0 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.004G217700 [exp] 314 / 5e-94 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.009G003500 [exp] 309 / 4e-92 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.003G156400 [exp] 125 / 3e-29 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 122 / 3e-28 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 56 / 6e-08 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 54 / 3e-07 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 53 / 5e-07 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 53 / 8e-07 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037928 pacid=23163699 polypeptide=Lus10037928 locus=Lus10037928.g ID=Lus10037928.BGIv1.0 annot-version=v1.0 ATGACCGACTTTGAAACGGCACAGCAGAAACCAGATTCCACCACGAGTGATGATCGTGTGGAATTTGAGAGGGGATGGGAGGAGTTGATGCGAGGCCACT TGGATGATTGTATGTCATTTGCGTCCTGTAGCTCTACTCGTACCCGGGATGGCGGCGAGGATGACGATGGGGATCAGCTTGTTCGCAGGAGACGAAGGTC TGATCTTGAATGTGATGATTTGGCCGAGTCATCTGCTGCGAGGAGGCGCCACTCCCGCATTCTCAGTAGGTGGGCTGCTAGGCAGGCTCAAGAGATGATC ACCACCATTGAGAGGAGGAATCGCGAGTCCGAGTTAATGGCGCTGGCAGGTCTCCATACAGTTTCTATGCTTGATTCCTCTTTCTTAAGGGAATCACAGT CACCCCCGCCCACTCCCAGAAGGCAGGGGGCTGCTGAACGGCCTAGCACTCGGGCGTCATCAATTCTGCAAATGTGGCGGGAGTTGGAAGATGAGCATGT GTTGAACAGGGCCCGTGTGAGGGTGAGGGAGAGGGAGCAATTGAGGCAGCAAACAAGTGTGGATTCTCGCTCTCCTCCTAATGCTTCCAATACAAACATG TCTGAGGCTCAAGGAAGTGAGAATCAGGGTAGTTTGGGGGATGGAAGCAGTGAAACCGAGTTTGGTCCGTGGTCTCCTGAGCAAATGGTTCGCCGGGCTG AGCGTGGTGAGGATGATGGCTCTAGTAGGGAGCAGTCTCCTGATCTTGGAGAATTTGAGCGGGAAAGGGTGAGGCAGATTGCTCGTGGGTGGATGGACAC TGGTATTAGTAGTGATCATGCATCTAATGTATCCCAACGGAATGGTGGTAGTAGAGCAGAGTGGCTTGGTGAAACAGAACGTGAGAGGGTGAGACTTGTG AGAGAGTGGGTGCAGATGACAAGTCAACAGCGGGGGCCACGCGGGGGTCGAAGGGAATCTCAAGTCACTGGAGATCAGGAAAGGTCAGTTGCTGATCCTG ATGAAGGCCAACCAGAACACGTTCGTAGGGACATTCTCAGGCTGCGTGGGCGACAAGCTGTTATTGATTTGTTAATGAGGATTGAGGGGGAAAGACAGCG TGAGCTTCAGGGATTGTTGGAACATAGAGCTGTCTCTGAATTTGCTCACCGCAATCGTATTCAGTCATTATTGAGGGGTAGATTCCTCCGAAATGAAGGC ACCGTTGAAGAAGAGAGACCACCTTCAGTGGCTACACCTGAATTAGTTCAATTAAGACAGCGGCACACGGTATCTGGTATAAGGGAAGGATTTCGTTCAA GGTTGGAAAATATTGTCCGTGGACAAGTAAGCAGCCAAACGGATACTCCTGATAATGACTCTAGAAATGGTCAGAATCAAACAGATACTTCACAGGATGT TCAACATGAAGATAGTGTTCAATCTGAACCTAGGACTCAAGAAAATGATGTCCAACTGTCACCTGATCAGACCGCGACCTCAGAAAGTAATACGCCCATT GATAACATGAATTGGCAGGAAACTGTTAATCAGGTTCGTGGTTGGCAGGAAGAACTTACGGACAACAGTGGAGGAAACTGGCAACAATCAGATTATGGTC CTTTCAATGAATGGAGAGGTGGCAGTGCTGATGCTGAACCAGTGGATCGAAGTTGGCTCGAGGAAACACCTGGTAATGTACATAATGAACCAGGTCGTCC ACAGGAAACCCAGGGAGTTTGGCATGAAGATGGCTCTCAGGAGGCAGTAGAAACGTGGATAGAGGAGATGCCTTCTGATCCACCAAGAGCTCGCCGTACT GTTCCAGTGAGAAGGTTTAGTAGATTTCACCCTCCAGATGATGAAAACGTGTACAGCATGGAGCTTAGAGAGTTATTGAGCAGGCGAAGTGTATCTAATC TTCTTCGGAGTGGTTTCCGCGAAAGTCTGGACCATTTGATCCAATCATATGTAGAGAGACAAGGTCGTCCTCCCATTGACTGGGATGTTCACAGAAGCTT GCCGATACAAAATCCTACATCCCCAGAGCAGGATGAAGAGCAACAGATCAGAGATGAACCTCAGGAAGACCAGCGTGCTGCCATAAATAGACCGTCAATG GCTCTTCGGCCTCCACCAGTGCCACCACCACAGCCTCTCTGGCACCAGGATTTACACCACACAGGCTGGCCTAGGCATAGCATGCATCGATCTGAACTGG AATGGGAAATGATTAATGATCTGAGAGCAGACATGGCGAGACTTCAGCAAGGAATGAGCCAAATGCAGAGAACGCTAGAGGCTTGCATGGATATGCAACT GGAGCTGCAGCGCTCCGTTAGACAGGAAGTGTCTGCAGCTCTGAATCGATCAGCTGGAGAAAAAGGAATGAGTGCAGGGACATCGGAGGATGGGTCAAAT TGGGGTCAAGTGAGGAAAGGGACTTGTTGCATATGTTGTGATAGCCAAATAGATTCTTTGTTGTACAGGTGTGGGCACATGTGCACTTGTTCAAAGTGTG CCAACGAACTGGTACGCGGTGGTGGTAAGTGCCCATTGTGTCGTGCACCGATCGTAGAAGTGATAAGAGCATACTCCATACTCTAA
AA sequence Show only first row Show all	>Lus10037928 pacid=23163699 polypeptide=Lus10037928 locus=Lus10037928.g ID=Lus10037928.BGIv1.0 annot-version=v1.0 MTDFETAQQKPDSTTSDDRVEFERGWEELMRGHLDDCMSFASCSSTRTRDGGEDDDGDQLVRRRRRSDLECDDLAESSAARRRHSRILSRWAARQAQEMI TTIERRNRESELMALAGLHTVSMLDSSFLRESQSPPPTPRRQGAAERPSTRASSILQMWRELEDEHVLNRARVRVREREQLRQQTSVDSRSPPNASNTNM SEAQGSENQGSLGDGSSETEFGPWSPEQMVRRAERGEDDGSSREQSPDLGEFERERVRQIARGWMDTGISSDHASNVSQRNGGSRAEWLGETERERVRLV REWVQMTSQQRGPRGGRRESQVTGDQERSVADPDEGQPEHVRRDILRLRGRQAVIDLLMRIEGERQRELQGLLEHRAVSEFAHRNRIQSLLRGRFLRNEG TVEEERPPSVATPELVQLRQRHTVSGIREGFRSRLENIVRGQVSSQTDTPDNDSRNGQNQTDTSQDVQHEDSVQSEPRTQENDVQLSPDQTATSESNTPI DNMNWQETVNQVRGWQEELTDNSGGNWQQSDYGPFNEWRGGSADAEPVDRSWLEETPGNVHNEPGRPQETQGVWHEDGSQEAVETWIEEMPSDPPRARRT VPVRRFSRFHPPDDENVYSMELRELLSRRSVSNLLRSGFRESLDHLIQSYVERQGRPPIDWDVHRSLPIQNPTSPEQDEEQQIRDEPQEDQRAAINRPSM ALRPPPVPPPQPLWHQDLHHTGWPRHSMHRSELEWEMINDLRADMARLQQGMSQMQRTLEACMDMQLELQRSVRQEVSAALNRSAGEKGMSAGTSEDGSN WGQVRKGTCCICCDSQIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	0	1
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	2.2	0.8417
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	2.4	0.8387
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	2.6	0.8366
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	3.2	0.8326
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	3.2	0.8613
AT2G25760			Protein kinase family protein ...		Lus10025827 [exp]	4.6	0.8441
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	5.1	0.8463
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	5.7	0.8336
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	11.0	0.8096
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	12.2	0.8422

Compare expression of checked genes

Lus10037928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.