Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04440 341 / 2e-118 Protein of unknown function (DUF1997) (.1) AT4G31115 95 / 9e-23 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038659 [exp] 450 / 2e-161 AT5G04440 345 / 6e-121 Protein of unknown function (DUF1997) (.1) Lus10026864 [exp] 98 / 7e-24 AT4G31115 244 / 2e-81 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030300 [exp] 353 / 2e-123 AT5G04440 342 / 5e-120 Protein of unknown function (DUF1997) (.1) Potri.010G230900 [exp] 339 / 5e-118 AT5G04440 330 / 2e-115 Protein of unknown function (DUF1997) (.1) Potri.005G179800 [exp] 86 / 2e-19 AT4G31115 205 / 4e-66 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [flax] [poplar] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Lus10037929 pacid=23163855 polypeptide=Lus10037929 locus=Lus10037929.g ID=Lus10037929.BGIv1.0 annot-version=v1.0 ATGCAAACTATGTCCACTTCGTATGAACCTTGTACAAACCTCGTACAAGTTGTACAACCGGACGTTGATTCCCCCAGAAACATAGAGCGGGCAATGGGGA ATTCCATGGGTGAAATTCTTTTCGTCAATAAGGTCGATGTCAGTGAGAAGCATTTCGGTAGCCGAGGCCGTTCCTCTGCTACTCCCGTCGGTGGCATTTT ACCCTCCATTTCTCTCCGATCCGGCGTCGGGAACAACACCCACAGTTGCCTCTTCACTCAGAGATTTGCTTCTTTCTCCCACAATGACCACCACTACTCC TCCTCCTCATCTTCTTCCACTACATTCGCTTCCTTGCGAGTTTCTGCCGATTCGACTCCCAAAGCCCGCTTCGTGGCACGCCGGAAGGAATCTATCTCCG TTCGCCAACTTGGGCGCCCTCTAATTGATTATATGAGCTTGCCTGCGAGTCAGTACTCGGTGTTGGATGCGGAGAGGATAGAGAGGGTAGACGACGACAC CTTCTGGTGTTATGTGTACAGGTTCAAGTTTTTCAATTTTGAAGTTTGCCCTGTTCTTCTCGTTAAGGTCGAGGAGCAGCCCAATGGCTGTTGCATTAAC CTCTTGTCTTGTAAGCTTGAGGGTTCACCAATTGTGGTCGCACAGAATGAAAAATTTGATGCTTCGATGGTGAACCGGATCTCATGTGATACCAGCCAAA GCGATTCATTGGGACAACAACTTACTTCTGATGCTGTTATTGAGGTAAGCATCGAGATTCCTTTCGCATTTAGGGTAATTCCAGTGGAAGCAATCGAGTC AGCTGGGACTGGAGTCCTGCAGCAGATACTGGGTGTCATGCTTCCCCGATTTATGCAGCAGCTTGTGAAAGACTATAAAGCATGGGCTGCTGGTGATACC TCAAGACAGGCGCTTGGAACGGGCGAGATCTGA
AA sequence Show only first row Show all	>Lus10037929 pacid=23163855 polypeptide=Lus10037929 locus=Lus10037929.g ID=Lus10037929.BGIv1.0 annot-version=v1.0 MQTMSTSYEPCTNLVQVVQPDVDSPRNIERAMGNSMGEILFVNKVDVSEKHFGSRGRSSATPVGGILPSISLRSGVGNNTHSCLFTQRFASFSHNDHHYS SSSSSSTTFASLRVSADSTPKARFVARRKESISVRQLGRPLIDYMSLPASQYSVLDAERIERVDDDTFWCYVYRFKFFNFEVCPVLLVKVEEQPNGCCIN LLSCKLEGSPIVVAQNEKFDASMVNRISCDTSQSDSLGQQLTSDAVIEVSIEIPFAFRVIPVEAIESAGTGVLQQILGVMLPRFMQQLVKDYKAWAAGDT SRQALGTGEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04440			Protein of unknown function (D...		Lus10037929 [exp]	0	1
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10010889 [exp]	2.8	0.8735
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	6.6	0.8533
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10021361 [exp]	6.7	0.8797
AT3G09050			unknown protein		Lus10035515 [exp]	7.5	0.8995
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	11.8	0.8534
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	12.3	0.8803
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	17.0	0.8274
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	20.1	0.8188
AT4G40070			RING/U-box superfamily protein...		Lus10034157 [exp]	23.4	0.8585
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	26.7	0.8656

Compare expression of checked genes

Lus10037929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.