Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038662 [exp] 221 / 6e-76 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037930 pacid=23163806 polypeptide=Lus10037930 locus=Lus10037930.g ID=Lus10037930.BGIv1.0 annot-version=v1.0 ATGGAGAGCAAGATGAGAGGATTTGTTGTGTTGATTGCAGTAGCTGCAACAATGTTGATGCTGTTTGCTGGGCAATGCCAGTCAGCTCCTTCTGCTGATG CTAAGAGTAGTCGTAAAGGCCACAAGATGAACCTCGGTGTATGCAACCCACTCTGCTTCTACCAATGTGCTGTCAACAAAGGCGACATGTTTTGCTATGG CAAGTGCCTAATGGAGTGCGCCGCAGTCTTTAATGGGAAACCTGACCCCAATAATCCCCGAGACATCTGCTTCATCAGCTGTGCTGTCCCTGGCTGTGCT AGCCTCTGCACCAAAGAGCACCCTTTCCCCGTGGAAAAGGTACAGACTTGTCTGCAGACTTGCTCAGACAACTGTGACGACATCAAGCCTGATAATTAA
AA sequence Show only first row Show all	>Lus10037930 pacid=23163806 polypeptide=Lus10037930 locus=Lus10037930.g ID=Lus10037930.BGIv1.0 annot-version=v1.0 MESKMRGFVVLIAVAATMLMLFAGQCQSAPSADAKSSRKGHKMNLGVCNPLCFYQCAVNKGDMFCYGKCLMECAAVFNGKPDPNNPRDICFISCAVPGCA SLCTKEHPFPVEKVQTCLQTCSDNCDDIKPDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037930 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024195 [exp]	4.4	0.8539
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	5.5	0.8119
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10028899 [exp]	6.9	0.7745
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040243 [exp]	7.5	0.7655
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	7.9	0.8285
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	13.3	0.7293
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	19.4	0.7944
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027796 [exp]	22.6	0.7631
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040245 [exp]	22.6	0.7896
					Lus10001030 [exp]	23.2	0.7426

Compare expression of checked genes

Lus10037930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.