Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15970 306 / 2e-99 NUP50 (Nucleoporin 50 kDa) protein (.1) AT1G52380 292 / 2e-94 NUP50 (Nucleoporin 50 kDa) protein (.1) AT5G58590 53 / 1e-07 RANBP1 RAN binding protein 1 (.1) AT2G30060 51 / 3e-07 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G07140 51 / 5e-07 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038663 [exp] 266 / 4e-87 AT1G52380 100 / 1e-24 NUP50 (Nucleoporin 50 kDa) protein (.1) Lus10037242 [exp] 51 / 6e-07 AT5G58590 269 / 6e-92 RAN binding protein 1 (.1) Lus10035656 [exp] 50 / 6e-07 AT5G58590 270 / 3e-92 RAN binding protein 1 (.1) Lus10035655 [exp] 49 / 2e-06 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1) Lus10037241 [exp] 48 / 4e-06 AT5G58590 264 / 4e-90 RAN binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179100 [exp] 402 / 2e-136 AT1G52380 326 / 4e-107 NUP50 (Nucleoporin 50 kDa) protein (.1) Potri.003G056400 [exp] 274 / 2e-86 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1) Potri.006G102400 [exp] 55 / 3e-08 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.009G073400 [exp] 54 / 5e-08 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.016G119800 [exp] 50 / 9e-07 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.001G278900 [exp] 49 / 2e-06 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.009G060901 [exp] 0 / 1 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08911 [flax] [poplar] NUP50 NUP50 (Nucleoporin 50 kDa) CL0266 [flax] [poplar] PH PF00638 [flax] [poplar] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Lus10037931 pacid=23163633 polypeptide=Lus10037931 locus=Lus10037931.g ID=Lus10037931.BGIv1.0 annot-version=v1.0 ATGGGGGATTCCGAAAATGTCCTTCCACCTTCAAAGAAGAGAGCTGCAGGTCGGGAGATATCCAAGGACAACCCTGGTCTTGATGATGACGAAGATTTGT CTGAAATGGAGGCTGGAACTTTCAAGAAGGCCAGTGATGAGGTTCTTGCTACTAGAAGAATTGTGAAAGTTCGGCGCAGTCAATCAACGGCAACCTCCTC AGTCCCGAAAGCCCCCTCGTCCAATCCATTTGCTGGGATTTGTTTGGTTTCACCAAGTGGTCCAACAGCAGTTCCTCAGTCGGGTGGAGTAACTTCAATT GAGAAAGCCTCAAGTGATACTAAAGATGATGCTTGTGATGTGACTAAGGAATCTGAAGAAGATGCTGATAAGAAGCTCGGAGAAAGCAATGTGAATGAGT CGGTCATTGAAACTACTACTGAGAATGAGACCACTCAAATTACTGCTGACCCAGTAAGTGAAGGGGCAGAACCCATCAAACATTCTGAGGAACCTTTAAA AGATAAAGCTGAGAGCGATGAGGTGGGCAAAGCCGTTAAGTCTGTGGATGAAAAGGCTGAAGGAGATGGATGTCAAGAAAAAGACGAGGACATCTCTCAG AGTGATAAAGCTAAAGACGTTGATGATAGCAAAACAGTAGAGGATACCAAAGAGGAGGATGACGAAAAGAAGGATAAGAGCAGTAGAAATGCTGACCCCA GTGCTGAAGGGACCGGCCTCAGCTCATTCCAGCAGCTTTCCAGTAGCCGAAATGCTTTCACTGGACTTGCTGGAACAGGATTCTCCAGCTCATCGTTCTC CTTTGGTTCAATCCCAACAGATGGGTCTCCATTTGGTAAAGGTGCTGGTCCCTTGTTTGGGCAGAAAAGTGACCAACCATCTTTTGGTTTTGGCCTCTCT ACAAATGGAAATTCTTCACTTTTTAACGCTTCAGGATCTTCTACTGGCACAAAGAGTGAAGGAAGCAGCAGCTTTCCTTCTATGCCAGAGGTTCCAGTTG AGACTGGAGAAGAGGATGAAAGGGCAGTTTTCTCCGCTGATTCTGTATTGTTTGAGTTCCTCGACGGTTCTTGGAAAGAGCGTGGGAAAGGAGAAGTGAA GGTGAATGTCCCTACAGGCGGAACAGAGAAAGCTAGGCTTTTGATGAGGTCTAAGGGTAACTTGAGGTTGATATTGAATGCCAACCTTTACTCGGATATA AAACTTACTAACATGGACAAGCGAGGCATCACTTTTGCTTGCATCAACAGCGTCGGTGAAGTCAAAGAAGCACTTTCAACCTTTGCTCTCAAGTTCAGGG ACGGTTCTATCGTGGAAGATTTTCGCGCAGCTGTGATACAACACAAAGATCACAACACTTCAGGAGTTCTCAAGACACCAGAGAACTCCCCTTAA
AA sequence Show only first row Show all	>Lus10037931 pacid=23163633 polypeptide=Lus10037931 locus=Lus10037931.g ID=Lus10037931.BGIv1.0 annot-version=v1.0 MGDSENVLPPSKKRAAGREISKDNPGLDDDEDLSEMEAGTFKKASDEVLATRRIVKVRRSQSTATSSVPKAPSSNPFAGICLVSPSGPTAVPQSGGVTSI EKASSDTKDDACDVTKESEEDADKKLGESNVNESVIETTTENETTQITADPVSEGAEPIKHSEEPLKDKAESDEVGKAVKSVDEKAEGDGCQEKDEDISQ SDKAKDVDDSKTVEDTKEEDDEKKDKSSRNADPSAEGTGLSSFQQLSSSRNAFTGLAGTGFSSSSFSFGSIPTDGSPFGKGAGPLFGQKSDQPSFGFGLS TNGNSSLFNASGSSTGTKSEGSSSFPSMPEVPVETGEEDERAVFSADSVLFEFLDGSWKERGKGEVKVNVPTGGTEKARLLMRSKGNLRLILNANLYSDI KLTNMDKRGITFACINSVGEVKEALSTFALKFRDGSIVEDFRAAVIQHKDHNTSGVLKTPENSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	0	1
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	2.4	0.8444
AT5G41190			unknown protein		Lus10008488 [exp]	3.5	0.8186
AT1G18850			unknown protein		Lus10024247 [exp]	3.5	0.7998
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	4.5	0.7867
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	7.4	0.7822
AT3G01160			unknown protein		Lus10041866 [exp]	8.5	0.7945
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10030631 [exp]	11.6	0.7615
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	12.0	0.7605
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10039030 [exp]	14.1	0.7225
AT1G02870			unknown protein		Lus10002436 [exp]	14.4	0.7938

Compare expression of checked genes

Lus10037931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.